Query         gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 348
No_of_seqs    123 out of 2932
Neff          6.5 
Searched_HMMs 39220
Date          Mon May 30 03:24:33 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780860.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 CHL00032 ndhA NADH dehydrogena 100.0       0       0  681.6  34.9  325    9-342    19-356 (359)
  2 COG1005 NuoH NADH:ubiquinone o 100.0       0       0  677.3  32.2  327    4-344     3-330 (332)
  3 MTH00029 ND1 NADH dehydrogenas 100.0       0       0  672.2  34.8  323   10-345     4-337 (343)
  4 MTH00216 ND1 NADH dehydrogenas 100.0       0       0  664.1  34.6  319   10-344     3-321 (327)
  5 PRK06076 NADH dehydrogenase su 100.0       0       0  663.4  32.6  328    7-346     7-334 (335)
  6 MTH00017 consensus             100.0       0       0  663.5  32.5  320   10-345     3-322 (327)
  7 MTH00054 ND1 NADH dehydrogenas 100.0       0       0  657.5  31.4  313   15-345     4-316 (321)
  8 MTH00040 ND1 NADH dehydrogenas 100.0       0       0  654.6  33.0  318   10-346     1-318 (323)
  9 MTH00111 ND1 NADH dehydrogenas 100.0       0       0  650.8  34.7  316   10-345     2-317 (323)
 10 MTH00071 ND1 NADH dehydrogenas 100.0       0       0  646.7  35.5  315   10-344     2-316 (322)
 11 MTH00104 ND1 NADH dehydrogenas 100.0       0       0  648.2  33.6  312   16-347     3-314 (318)
 12 MTH00134 ND1 NADH dehydrogenas 100.0       0       0  642.9  34.7  318   10-347     3-320 (324)
 13 pfam00146 NADHdh NADH dehydrog 100.0       0       0  648.2  29.9  307   15-341     2-308 (309)
 14 MTH00218 ND1 NADH dehydrogenas 100.0       0       0  642.4  32.2  307   12-345     2-308 (314)
 15 MTH00143 ND1 NADH dehydrogenas 100.0       0       0  642.0  31.1  304   14-340     2-305 (306)
 16 MTH00193 ND1 NADH dehydrogenas 100.0       0       0  635.9  33.0  303   12-341     1-303 (306)
 17 MTH00010 ND1 NADH dehydrogenas 100.0       0       0  635.4  32.9  306   15-344     5-310 (311)
 18 MTH00195 ND1 NADH dehydrogenas 100.0       0       0  639.6  28.8  305   12-344     1-305 (307)
 19 MTH00159 consensus             100.0       0       0  635.0  32.4  301   15-342     1-301 (307)
 20 MTH00058 ND1 NADH dehydrogenas 100.0       0       0  622.7  28.8  292   13-337     3-294 (296)
 21 KOG4770 consensus              100.0       0       0  606.9  28.4  309   13-341     3-311 (315)
 22 MTH00090 ND1 NADH dehydrogenas 100.0       0       0  604.6  30.3  283   18-341     2-284 (285)
 23 COG0650 HyfC Formate hydrogenl 100.0       0       0  408.1  31.9  304   12-335     3-306 (309)
 24 TIGR01972 NDH_I_M proton-trans  93.4    0.54 1.4E-05   25.0   8.5  136  112-274   139-311 (532)
 25 PRK08668 NADH dehydrogenase su  78.5     4.7 0.00012   19.4  13.4   65  118-186   128-192 (616)
 26 pfam00361 Oxidored_q1 NADH-Ubi  76.5     5.3 0.00014   19.0   8.4   97  120-234    10-108 (270)
 27 PRK12662 putative monovalent c  74.8     5.9 0.00015   18.8  14.8  102  117-234   135-238 (491)
 28 PRK12648 putative monovalent c  64.5     9.8 0.00025   17.4   8.9   91  118-227   296-386 (950)
 29 PRK12663 putative monovalent c  63.0      10 0.00027   17.3  13.7   94  118-227   133-226 (497)
 30 PRK12644 putative monovalent c  62.1      11 0.00028   17.2   8.9   93  116-227   290-382 (968)
 31 PRK02504 NAD(P)H-quinone oxido  60.9      11 0.00029   17.0   8.1   95  117-227   136-231 (514)
 32 PRK08375 putative monovalent c  60.9      11 0.00029   17.0  15.0  102  118-234   132-235 (481)
 33 PRK12668 putative monovalent c  57.1      13 0.00034   16.6  11.9  100  119-237   266-365 (569)
 34 KOG1277 consensus               53.7     9.1 0.00023   17.6   2.0   88  132-229   341-431 (593)
 35 PRK12650 putative monovalent c  51.6      16 0.00042   16.1   9.2   93  116-227   295-387 (969)
 36 PRK07363 NAD(P)H-quinone oxido  51.5      16 0.00042   16.1  14.4   98  120-234   135-234 (499)
 37 PRK12647 putative monovalent c  50.8      17 0.00043   16.0  12.1   93  116-227   282-374 (761)
 38 PRK12665 putative monovalent c  50.5      17 0.00043   16.0  12.2  100  116-232   135-236 (524)
 39 COG2966 Uncharacterized conser  49.4      18 0.00045   15.9   6.5   48  223-276   101-149 (250)
 40 PRK06458 hydrogenase 4 subunit  45.7      20 0.00052   15.5  14.3   27  208-234   215-243 (491)
 41 pfam10125 NADHdeh_related NADH  45.5      20 0.00052   15.5   5.2  132   84-250    68-199 (219)
 42 PRK12664 putative monovalent c  44.9      21 0.00053   15.5   9.4   93  116-227   225-320 (530)
 43 pfam11436 DUF3199 Protein of u  44.5      12 0.00031   16.9   1.5   37  224-260    25-70  (124)
 44 PRK08667 hydrogenase membrane   44.2      21 0.00055   15.4  11.6  105  117-242   136-249 (644)
 45 pfam01741 MscL Large-conductan  43.7      22 0.00056   15.3   8.5   21  207-227    82-102 (127)
 46 PRK06591 putative monovalent c  42.8      23 0.00057   15.3  10.6  104  115-234   139-244 (433)
 47 MTH00014 ND4 NADH dehydrogenas  40.9      24 0.00062   15.1  12.7  114  116-245   111-233 (451)
 48 PRK07691 putative monovalent c  39.3      26 0.00065   14.9  16.5  104  117-234   134-239 (498)
 49 PRK05846 NADH dehydrogenase su  37.6      27 0.00069   14.8  13.2   92  117-227   136-232 (495)
 50 MTH00062 ND4 NADH dehydrogenas  37.2      28  0.0007   14.7  11.8   67  113-180    93-159 (419)
 51 PRK12646 putative monovalent c  36.9      28 0.00071   14.7   9.6   94  115-227   296-403 (800)
 52 KOG2232 consensus               35.8      17 0.00042   16.1   1.0   28   35-62     95-135 (734)
 53 TIGR02019 BchJ bacteriochlorop  34.0      21 0.00054   15.4   1.3   13   47-64      1-13  (189)
 54 PRK06473 NAD(P)H-quinone oxido  33.7      31  0.0008   14.4  13.8  109  117-242   132-249 (500)
 55 MTH00110 ND4 NADH dehydrogenas  33.0      32 0.00082   14.3  14.5  125  113-253   113-246 (459)
 56 KOG1275 consensus               31.8      20  0.0005   15.6   0.9   31  219-249   955-986 (1118)
 57 KOG2228 consensus               27.1      41   0.001   13.7   2.7   46   31-81    182-227 (408)
 58 PRK00989 truB tRNA pseudouridi  26.9      17 0.00042   16.1  -0.2   32   37-68     22-53  (235)
 59 MTH00206 ND4 NADH dehydrogenas  25.6      43  0.0011   13.5  15.4  105  122-245   122-235 (452)
 60 cd00506 PseudoU_synth_TruB_lik  25.5      17 0.00044   16.0  -0.3   30   37-66     13-42  (210)
 61 KOG1047 consensus               25.5      32 0.00083   14.3   1.1   41   31-71    318-367 (613)
 62 pfam08809 DUF1799 Phage relate  24.6      46  0.0012   13.4   1.8   26   42-69     32-58  (83)
 63 pfam05348 UMP1 Proteasome matu  24.5      41   0.001   13.7   1.5   19   32-50     65-83  (130)
 64 PRK04099 truB tRNA pseudouridi  24.1      20 0.00051   15.6  -0.2   30   37-66     15-44  (272)
 65 PRK13954 mscL large-conductanc  23.1      49  0.0012   13.2   7.3   20  207-226    75-94  (120)
 66 PRK09759 small toxic polypepti  22.7      49  0.0013   13.2   4.2   25   28-52     15-39  (50)
 67 TIGR01770 NDH_I_N proton-trans  22.7      50  0.0013   13.2   9.1  115  117-236   130-249 (491)
 68 PRK13419 F0F1 ATP synthase sub  22.7      50  0.0013   13.2  12.4   72   32-107   116-188 (335)
 69 CHL00011 ndhD NADH dehydrogena  22.2      51  0.0013   13.1  13.3   35  208-242   212-255 (500)
 70 PTZ00227 variable surface prot  22.2      47  0.0012   13.3   1.4   20  235-254   275-294 (418)
 71 PRK12645 monovalent cation/H+   21.9      51  0.0013   13.1  12.6   92  121-227   139-230 (800)
 72 PRK08168 NADH dehydrogenase su  21.6      52  0.0013   13.1   9.8   90  132-234   137-231 (514)
 73 PRK12667 putative monovalent c  21.5      52  0.0013   13.1  18.9  112  118-234   139-252 (517)
 74 PRK02546 NAD(P)H-quinone oxido  21.3      53  0.0013   13.0  14.1  108  121-245   147-263 (531)
 75 TIGR00109 hemH ferrochelatase;  20.8      30 0.00076   14.5   0.1   25   44-73    250-276 (339)
 76 PRK08676 hydrogenase membrane   20.5      55  0.0014   12.9  14.4   85  120-226   299-386 (486)
 77 PRK01528 truB tRNA pseudouridi  20.5      26 0.00065   14.9  -0.2   30   37-66     16-45  (293)
 78 PRK06041 flagellar assembly pr  20.4      55  0.0014   12.9   9.9  113  221-337   157-282 (547)

No 1  
>CHL00032 ndhA NADH dehydrogenase subunit 1
Probab=100.00  E-value=0  Score=681.62  Aligned_cols=325  Identities=37%  Similarity=0.650  Sum_probs=308.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             99999999999999999999999999999999999972789985744531888999999986305464535403898589
Q gi|254780860|r    9 FVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAP   88 (348)
Q Consensus         9 ~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P   88 (348)
                      ...++.++++.+..+++++++++|+||.|||++||+|+|+||||||+.|++||++|++||+.||+++|+++|+..|.++|
T Consensus        19 ~~~~~~~~i~i~~~~~~vll~Vaf~tl~ERKila~~Q~R~GPn~vg~~GllQpiaD~~KLl~KE~i~p~~a~~~~f~~aP   98 (359)
T CHL00032         19 VYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLIPSRGDTRLFSIGP   98 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999998654718082571255699999999998677861034799999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999998665318785523564050578999999999999999987512443210123344310136787668999999
Q gi|254780860|r   89 LVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTV  168 (348)
Q Consensus        89 ~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~  168 (348)
                      .+.++++++.|.++|++++....|.+.++++.++++++.+++++++||+||||||.+|+.|+++|++|||+|+.++++++
T Consensus        99 ~l~~~~~~l~~~~iP~~~~~~~~~~~~~ll~~l~~~sl~~~~ill~GWaSnskYs~lG~~R~~aq~ISYEi~l~l~~~~~  178 (359)
T CHL00032         99 SIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI  178 (359)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999996146653210544999999999988999888101112768889999999999999889999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf             99823789899999851000022111124466699999989999999976875430100357608888987543023201
Q gi|254780860|r  169 VLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPY  248 (348)
Q Consensus       169 ~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~  248 (348)
                      ++.+||+|+.+++++|+.++         ...|+.+.+|+++++|+++++||+||+|||+||||||||+|++|||||.+|
T Consensus       179 ~l~~gs~sl~~iv~~Q~~~~---------~~~w~~~~~P~~fiiflI~~lAE~nR~PFDl~EaESELVsG~~tEYsG~~f  249 (359)
T CHL00032        179 SLLSNSLSTVDIVEAQSKYG---------FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKF  249 (359)
T ss_pred             HHHHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHH
T ss_conf             99947886899999988789---------999999998999999999999984899999886409885141320164979


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1588999999999999999732365543122-------------366665689999999999999999999741012549
Q gi|254780860|r  249 LLFMLAEYSTIVLMCTLASILFLGGWLPPFD-------------ISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRY  315 (348)
Q Consensus       249 ~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~-------------~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~  315 (348)
                      ++++++||.+++++|.+.+++|+|||++|..             .+..+.+.|..|+++|+.++.++++|+|+++||+|+
T Consensus       250 ~lffl~EY~~i~~~s~l~svLFlGGw~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~K~~~~~f~~iwiR~t~PR~Ry  329 (359)
T CHL00032        250 GLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFEINKTGGVFGTTIGIFITLAKTYLFLFISITTRWTLPRLRM  329 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             99999999999999999999970677665421111023100001236777789999999999999999999981701539


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999885427899999999999999999
Q gi|254780860|r  316 DQLMRLGWKVFLPLSFAMVLIVSFFLK  342 (348)
Q Consensus       316 Dq~~~~~Wk~llpl~l~~~~~~~~~~~  342 (348)
                      ||+|+++||+++|++++|+++++.++.
T Consensus       330 Dqlm~l~WK~lLPlal~~l~l~~~~~~  356 (359)
T CHL00032        330 DQLLNLGWKFLLPISLGNLLLTTSSQL  356 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998999999999999999999999


No 2  
>COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]
Probab=100.00  E-value=0  Score=677.28  Aligned_cols=327  Identities=54%  Similarity=0.930  Sum_probs=311.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             68789999999999999999999999999999999999999727899857445318889999999863054645354038
Q gi|254780860|r    4 FIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKIL   83 (348)
Q Consensus         4 ~~~~~~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~   83 (348)
                      ...++..+.+....+.+..++.+...+++.+|.|||+.||+|+|+|||+|||+|++|+++|.+|+++||+++|+++|+.+
T Consensus         3 ~~~~~~~~l~~~~~k~i~ili~~~~~~~~~~w~ERK~~a~~Q~R~GP~~VGp~GllQ~~AD~iKl~fKE~iiP~~adk~~   82 (332)
T COG1005           3 LFSDMDIPLLFTILKIVVILIGLLVAGAFLVWFERKLAARVQLRYGPNRVGPFGLLQLLADAIKLFFKEDIIPRGADKFL   82 (332)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             14777999999999999999999999999999999999998835487600873288999999999850644578775037


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98589899999986653187855235640505789999999999999999875124432101233443101367876689
Q gi|254780860|r   84 FLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGL  163 (348)
Q Consensus        84 f~~~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l  163 (348)
                      |.++|+++++.++..++++|+++++...|.|.++++.++++|+.+|+++++||+|||||+.+|+.|+++|++|||+++.+
T Consensus        83 f~laPii~~~~a~~~~avIP~~~~~~v~~invgll~~~a~ssl~vygii~~GwASNnKya~lGa~R~aaq~iSYEV~~~l  162 (332)
T COG1005          83 FTLAPIIALIPAFLAFAVIPFGPEWVVANLNVGLLFILAISSLGVYGIILAGWASNNKYALLGALRAAAQMISYEVPLGL  162 (332)
T ss_pred             HHHHHHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88847999999999870205799514418863999999999889999885445417803678999999899787899999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999998237898999998510000221111244666999999899999999768754301003576088889875430
Q gi|254780860|r  164 VIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEY  243 (348)
Q Consensus       164 ~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEY  243 (348)
                      +++++.+.+||+|+.||+++|...            .|+++.+|++|++|+++++|||||.|||+||||||+|+||+|||
T Consensus       163 sv~~vv~~~GSln~~~IV~~Q~~~------------~W~~~~~p~~Fivf~Ia~laet~R~PFDl~EaE~ElVaG~~tEY  230 (332)
T COG1005         163 SVLAVVMLAGSLNLVDIVNAQSGL------------LWNILLQPIAFIVFLIAMLAETNRFPFDLPEAESELVAGYSTEY  230 (332)
T ss_pred             HHHHHHHHHCCCCHHHHHHHCCCC------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCH
T ss_conf             999999994788799999863567------------64588718999999999999848999888754476641564011


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23201158899999999999999973236554312236666568-99999999999999999997410125499998854
Q gi|254780860|r  244 SSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIP-GFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLG  322 (348)
Q Consensus       244 sG~~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~-~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~  322 (348)
                      ||.+|++++++||.+++..|.+.+++|||||++|+..+.  ..+ +.+|+++|+..+.++++|+|+++||+|+||.|+++
T Consensus       231 Sg~~f~Lf~lgeY~~~~l~s~l~s~LFlGGw~~p~~~~~--~~p~~~iw~~~K~~~~~f~~~~~Ra~~PR~R~DQ~m~lg  308 (332)
T COG1005         231 SGIKFGLFFLGEYINIILFSALVALLFLGGWLGPFPPPG--WVPGPFVWFVLKTAFLFFFFLWLRATLPRYRYDQLMRLG  308 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             118999999899999999999999998358788876543--578650246899999999999999857726699999724


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2789999999999999999999
Q gi|254780860|r  323 WKVFLPLSFAMVLIVSFFLKIY  344 (348)
Q Consensus       323 Wk~llpl~l~~~~~~~~~~~~~  344 (348)
                      ||.++|++++|+++++.+....
T Consensus       309 WK~lLPlsl~nlv~ta~~~~~~  330 (332)
T COG1005         309 WKILLPLTLVNLVLTAALLLLV  330 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             7999999999999999999623


No 3  
>MTH00029 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=672.20  Aligned_cols=323  Identities=50%  Similarity=0.905  Sum_probs=305.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
                      ...+...++.+...++++++++|+||.|||++||+|+|+||||||+.|++||++|++||++||+++|+++|++.|..+|.
T Consensus         4 ~~~i~~~i~~l~~~~~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~lKLl~KE~i~p~~a~~~~f~~~P~   83 (343)
T MTH00029          4 YSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI   83 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999999999999999999999999998758080626824756999999999986567654015999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
                      ++++.+.+.|.++|++++....|.+.+++++++++|+++++++++||+||||||.+|+.|+++|++|||+|+.+++++++
T Consensus        84 i~~~~s~~~~~~iP~~~~~~~~~~~~~il~~l~l~sl~~~~~llaGWsSnskYsllG~~R~~aq~iSYEv~l~l~~l~~~  163 (343)
T MTH00029         84 ISFTLAILAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVI  163 (343)
T ss_pred             HHHHHHHHHHEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999988770311587500315748999999999889999886220037864335899999997163274999999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
                      +.+||+|+.+++++|++             .|+...+++++++|+++++||+||+|||+||||||||+|+||||||.+|+
T Consensus       164 l~~gs~~l~~i~~~q~~-------------~~~~~~~~~~~i~~li~~laE~nR~PFDl~EaESELVsG~~tEYsg~~f~  230 (343)
T MTH00029        164 LCVGSLNISEIVISQRS-------------VWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFA  230 (343)
T ss_pred             HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH
T ss_conf             99448868999999876-------------88876558899999999999858899987764255620226662670579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999997323655431223-----------66665689999999999999999999741012549999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDI-----------SLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQL  318 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~-----------~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~  318 (348)
                      +++++||.+++++|++.+++|+|||++|...           ......++..|+.+|+.++.++++|+|+++||+|+||+
T Consensus       231 lffl~EY~~~~~~s~l~~~lFlGGw~~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~K~~~~~~~~i~vR~t~PR~R~Dql  310 (343)
T MTH00029        231 LFFLAEYSNIILMSCMMTIFFLGGWLSPLDGIPTPPEAFSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQL  310 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             99999999999999999999817665533344431012012110012258999999999999999999971722769985


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             885427899999999999999999997
Q gi|254780860|r  319 MRLGWKVFLPLSFAMVLIVSFFLKIYT  345 (348)
Q Consensus       319 ~~~~Wk~llpl~l~~~~~~~~~~~~~~  345 (348)
                      |++|||+++|++++|+++++.++..+.
T Consensus       311 m~l~Wk~lLPlsl~~li~ta~i~~~~~  337 (343)
T MTH00029        311 MKLLWKTYLPLSLGLVILTAGILIGFN  337 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             997899999999999999999999976


No 4  
>MTH00216 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=664.05  Aligned_cols=319  Identities=51%  Similarity=0.916  Sum_probs=304.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
                      ++++.++++.+..++.++++++|+||.|||++||+|+|+||||||+.|++||++|++||++||+++|+++|+..|..+|.
T Consensus         3 ~~~~~~~~~~l~~~~~vll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KL~~Ke~i~p~~~~~~~f~~aP~   82 (327)
T MTH00216          3 VTIIYLIFKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVGGLLQPFADGVKLFTKEMVIPHQANLFVYIVAPV   82 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999999999999999999999999997637180857835866999999999984887765235999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
                      ++++++++.|.++|++++....|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+++++++++
T Consensus        83 i~~~~~l~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~~~l~GwsSnskYs~lG~~R~~aq~iSYEi~l~l~~~~v~  162 (327)
T MTH00216         83 LSFTLAFIVWGVIPYERGVLISDLKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLILISVL  162 (327)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999888411688630107658899999999988888787321568860775188999999873274999999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
                      +.+||+|+.+++++|+++            .|+...+++++++|+++++||+||+|||++|||||||+|+||||||.+|+
T Consensus       163 l~~~s~~l~~i~~~q~~~------------~~~~~~~~~~~~i~li~~laE~nR~PFD~~EaESELVsG~~tEYsg~~f~  230 (327)
T MTH00216        163 LCVGSLSITEIVLAQNNG------------IWFFFPLFPVTIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFA  230 (327)
T ss_pred             HHHCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEHHHHHCCHHHH
T ss_conf             981688489999999714------------89885146557899999999968899998865454510028886268789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL  329 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl  329 (348)
                      +++++||.+++++|.+.+++|+|||.+|..    ....|..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+
T Consensus       231 l~fl~EY~~i~~~s~l~~~lFlgg~~~~~~----~~~~~~~~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~l~Wk~lLPl  306 (327)
T MTH00216        231 LFFLAEYAHIILMSCLTTILFLGGWLSPIK----YLKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKGYLPL  306 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHH
T ss_conf             999999999999999999998652412003----3435799999999999999999997352152999699999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780860|r  330 SFAMVLIVSFFLKIY  344 (348)
Q Consensus       330 ~l~~~~~~~~~~~~~  344 (348)
                      +++|+++++.++.-+
T Consensus       307 ~l~~l~~~~~~~~~~  321 (327)
T MTH00216        307 SLGVVTFVASVLFGL  321 (327)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999997


No 5  
>PRK06076 NADH dehydrogenase subunit H; Provisional
Probab=100.00  E-value=0  Score=663.38  Aligned_cols=328  Identities=56%  Similarity=0.969  Sum_probs=312.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             89999999999999999999999999999999999999727899857445318889999999863054645354038985
Q gi|254780860|r    7 DFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLL   86 (348)
Q Consensus         7 ~~~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~   86 (348)
                      ...-|++..+++.+..++.++++++|+||+|||++||+|+|+||||||+.|++||++|+.||++||+++|+++|++.|..
T Consensus         7 ~~~~~~~~~~i~~~~~~l~~ll~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~~~p~~~~~~~f~~   86 (335)
T PRK06076          7 PGLAPILLTLLKAVVILVVVLLCVAFLIWAERKVLARMQLRIGPNRVGPFGLLQLVADGIKLFFKEDIIPKGADKFLFLL   86 (335)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             86329999999999999999999999999999999971368080926755021899999999885777620248999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89899999986653187855235640505789999999999999999875124432101233443101367876689999
Q gi|254780860|r   87 APLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIV  166 (348)
Q Consensus        87 ~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~  166 (348)
                      +|+++++.+.+.|.++|++++....|.++++++.++++++++++++++||+||||||.+|+.||++|++|||+|+.++++
T Consensus        87 ~P~l~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~~~l~GwsS~s~Ys~iG~~R~~~q~isyEv~l~l~~~  166 (335)
T PRK06076         87 APVIAFIPAFLAWAVIPFGPGLVIADINVGILFILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLL  166 (335)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999986256651136557899999999989998887132069963235999999997878899999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99998237898999998510000221111244666999999899999999768754301003576088889875430232
Q gi|254780860|r  167 TVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSST  246 (348)
Q Consensus       167 ~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~  246 (348)
                      ++++.+||+|+.+++++|..+.          ..|+.+.+++++++|+++++||+||.|||++|||||+|+|++|||||.
T Consensus       167 ~~~l~~gs~~~~~i~~~q~~~~----------~~~~~~~~~~~~i~~~i~~lae~~R~PFD~~EaEsELVsG~~tEYsG~  236 (335)
T PRK06076        167 AVVMLAGSLNLSDIVNAQSGGL----------LSWNILPQPPGFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGM  236 (335)
T ss_pred             HHHHHHCCCCHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf             9999964887999999885220----------189999999999999999999838999987756478876597786438


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01158899999999999999973236554312236666568999999999999999999974101254999988542789
Q gi|254780860|r  247 PYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVF  326 (348)
Q Consensus       247 ~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~l  326 (348)
                      +|++++++||.+++++|++.+.+|+|||++|..  ..+..++..|+++|+.++.++++|+|+++||+|+||+++++||++
T Consensus       237 ~fal~flaey~~~~~~s~l~~~lFlGG~~~~~~--~~~~~~~~~~~~~k~~~v~~~~i~iR~~~pR~R~Dqlm~~~Wk~~  314 (335)
T PRK06076        237 KFGLFFLGEYINMILMSALASTLFLGGWLPPWP--FLGWIPGAIWFVLKVFFFVFLFIWLRATLPRYRYDQLMRLGWKVL  314 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             899999999999999999999998477755421--111208999999999999999999997362041999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999976
Q gi|254780860|r  327 LPLSFAMVLIVSFFLKIYTL  346 (348)
Q Consensus       327 lpl~l~~~~~~~~~~~~~~~  346 (348)
                      +|+++++++++.+++.++..
T Consensus       315 Lpl~l~~lil~~~~~l~~~~  334 (335)
T PRK06076        315 LPLSLVNLLVTAAVLLLFPQ  334 (335)
T ss_pred             HHHHHHHHHHHHHHHHEECC
T ss_conf             99999999999999950078


No 6  
>MTH00017 consensus
Probab=100.00  E-value=0  Score=663.51  Aligned_cols=320  Identities=52%  Similarity=0.923  Sum_probs=303.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
                      ..++.++++.+..+++++++++|+||.|||++||+|+|+||||||+.|++||++|++||++||+++|+++|++.|..+|.
T Consensus         3 ~~~~~~li~~l~~~~~~ll~vaf~tl~ERKila~iQ~R~GPn~vg~~GllQp~aD~~KL~~Ke~i~p~~~~~~~f~~~P~   82 (327)
T MTH00017          3 VSIIHLLLKILMVVVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGIKLFTKEMVIPHQANLFVYIVAPV   82 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999999999999999999999999995647080736834866999999999985777767440999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
                      ++++++.+.|.++|++++....|.+.++++++++.++++++++++||+||||||.+|+.|+++|++|||+|+++++++++
T Consensus        83 l~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~i~l~GwsSnskYs~lG~~R~~aq~iSYEi~l~l~~l~~~  162 (327)
T MTH00017         83 LSFTLALIVWGVVPYERGVLISDLKIGILYVLAISSISVYAILMSGWASNSKYAFLGAIRAAAQMISYEVSIGLIIISVL  162 (327)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999988634577623106638999999999848887674021258852475787999988510163899999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
                      +.+||+|+.+++++|+++            .|+...+++++++|+++++||+||+|||++|||||||+|+||||||.+|+
T Consensus       163 l~~~s~~l~~i~~~q~~~------------~~~~~~~~~~~ii~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~  230 (327)
T MTH00017        163 LCVGSLSITEIVLAQNSG------------VWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFA  230 (327)
T ss_pred             HHHCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHCCHHHH
T ss_conf             995588599999999805------------89999789999999999999978899998877622256534673478789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL  329 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl  329 (348)
                      +++++||.+++++|++.+++|+|||.+|...    ...+..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+
T Consensus       231 l~flaEY~~~~~~s~l~~~lFlGg~~~p~~~----~~~~~~w~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~l~Wk~llPl  306 (327)
T MTH00017        231 LFFLAEYAHIILMSCLTTILFLGGWLSPIKY----LKGGAGWFGLKVVFIILLFIWVRASFPRIRYDQLMALLWKAYLPL  306 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999986401001444----525799999999999999999997252253999599899999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999997
Q gi|254780860|r  330 SFAMVLIVSFFLKIYT  345 (348)
Q Consensus       330 ~l~~~~~~~~~~~~~~  345 (348)
                      +++|+++++.+..-+.
T Consensus       307 ~l~~~~~~~~~~~~~~  322 (327)
T MTH00017        307 SLGVVTFVASVLFGLN  322 (327)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999999976


No 7  
>MTH00054 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=657.53  Aligned_cols=313  Identities=53%  Similarity=0.924  Sum_probs=299.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999972789985744531888999999986305464535403898589899999
Q gi|254780860|r   15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVIL   94 (348)
Q Consensus        15 ~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~   94 (348)
                      ++++.+..+++++++++|+|+.|||++||+|+|+||||||+.|++||++|++||+.||+++|+++|++.|..+|.+.+++
T Consensus         4 ~~l~~~~~~i~~ll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KL~~Ke~i~p~~~~~~~f~~aP~~~~~~   83 (321)
T MTH00054          4 IIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPIADGLKLFTKEIIIPNHANIFIYIMAPILSLTL   83 (321)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             09999999999999999999999999999865808085783365699999999998378685633289999999999999


Q ss_pred             HHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98665318785523564050578999999999999999987512443210123344310136787668999999998237
Q gi|254780860|r   95 SLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGS  174 (348)
Q Consensus        95 ~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs  174 (348)
                      ++..|.++|++++....|.+.++++++++++++++++.++||+||||||.+|+.|+++|++|||+|+.++++++++.+||
T Consensus        84 ~~~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~ill~GwsSnskYs~iG~~R~~aq~iSYEi~l~l~~~~~~l~~gs  163 (321)
T MTH00054         84 AFIAWGVIPYGEGIVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGS  163 (321)
T ss_pred             HHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999872126773531446999999999987888877500135886545433589988765439999999999998235


Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             89899999851000022111124466699999989999999976875430100357608888987543023201158899
Q gi|254780860|r  175 LNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA  254 (348)
Q Consensus       175 ~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~  254 (348)
                      +|+.+++++|++             .|+...+++++++|+++++||+||+|||++|||||||+|+||||||.+|++++++
T Consensus       164 ~~l~~i~~~q~~-------------~~~~~~~~~~~ii~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsg~~f~l~fl~  230 (321)
T MTH00054        164 LNLTEIVLAQKN-------------IWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLA  230 (321)
T ss_pred             CHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHCCCHHHHHHHH
T ss_conf             404699998755-------------7887607889999999999984889999886662604555999746357999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999997323655431223666656899999999999999999997410125499998854278999999999
Q gi|254780860|r  255 EYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMV  334 (348)
Q Consensus       255 ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~  334 (348)
                      ||.+++++|++.+++|+|||++|.     ....+..|+.+|+.++.++++|+|+++||+|+||+++++||+++|++++|+
T Consensus       231 ey~~~~~~s~l~~~lFlgg~~~p~-----~~~~~~~~~~~k~~~~~~~~i~vR~~~pR~R~Dqlm~l~Wk~llPl~l~~l  305 (321)
T MTH00054        231 EYCHIILMSTFGVILFLGGWLGPL-----IFFSNSSFFGVKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFV  305 (321)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999998714233211-----456899999999999999999999606007099989999999999999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999997
Q gi|254780860|r  335 LIVSFFLKIYT  345 (348)
Q Consensus       335 ~~~~~~~~~~~  345 (348)
                      ++++.++..+.
T Consensus       306 ~~~~~i~~~~~  316 (321)
T MTH00054        306 VLVSGILIGFN  316 (321)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999976


No 8  
>MTH00040 ND1 NADH dehydrogenase subunit 1; Validated
Probab=100.00  E-value=0  Score=654.64  Aligned_cols=318  Identities=43%  Similarity=0.804  Sum_probs=299.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
                      |+.+.++++.+..++.++++++|+||+|||++||+|+|+||||||+.|++||++|++||++||++.|+++|++.|..+|.
T Consensus         1 ~~~~~~~i~~~~~~~~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~   80 (323)
T MTH00040          1 MTYILFLLNSINFIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADGFKLFIKETLKPSNASPYLFFLSPA   80 (323)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             93799999999999999999999999999999998658080866754446999999999882787754120899999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
                      +.+++++..|.++|.+.+  ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.+++++++
T Consensus        81 i~~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~i~sl~~~~~ll~GwsSnskYs~iGa~R~~aq~iSYEv~l~l~~l~~~  158 (323)
T MTH00040         81 LFLFLALLLWSIIPVHNP--TLNINLSLLLVLGLSSLSVYSLLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLI  158 (323)
T ss_pred             HHHHHHHHHHHHHHCCCC--EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999706885--033133699999998637888886313468854464161899987413387899999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
                      +.+||+|+.+++++|++             .|+....++++++|+++++||+||+|||+||||||||+|++|||||.+|+
T Consensus       159 ~~~gs~~l~~i~~~q~~-------------~~~~~~~~~~f~~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~  225 (323)
T MTH00040        159 IFSGGFNLNYIENSQEG-------------SWLAFSCLPLFYIWFISTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFA  225 (323)
T ss_pred             HHCCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEHHCCCCHHHH
T ss_conf             96378869999999688-------------99999999999999999999968999988865321134110023667679


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL  329 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl  329 (348)
                      +++++||.+++++|.+.+.+|+|||.+....    ...+..|+.+|+..+.++++|+|+++||+|+||+|+++||+++|+
T Consensus       226 l~flaEY~~i~~~s~l~~~lFlGg~~p~~~~----~~~~~~~~~lk~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~lLPl  301 (323)
T MTH00040        226 LFFIAEYANIIFMNLLSVVLFLGGSSPINEL----FPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKSYLPL  301 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999982888531014----478999999999999999999998173065999899888999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999976
Q gi|254780860|r  330 SFAMVLIVSFFLKIYTL  346 (348)
Q Consensus       330 ~l~~~~~~~~~~~~~~~  346 (348)
                      +++|++++.+.+.....
T Consensus       302 ~l~~l~~~~~l~~~~~~  318 (323)
T MTH00040        302 SIGFLIFFIILLSSLNI  318 (323)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999999817


No 9  
>MTH00111 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=650.81  Aligned_cols=316  Identities=44%  Similarity=0.776  Sum_probs=298.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
                      ++++..+++.+..++.++++++|+|++|||++||+|+|+||||||++|++||++|++||+.||++.|+++|+..|..+|+
T Consensus         2 ~~~l~~li~~l~~~i~vl~~vaf~tl~ERKvla~~Q~R~GPn~vg~~GllQp~aD~lKLl~Ke~i~p~~~~~~~f~~aP~   81 (323)
T MTH00111          2 MTLLTNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPTLFILSPI   81 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             89999999999999999999999999999999986548180955776334888999999995886620038999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
                      ++++++.+.|..+|.+.  ...|.+.+++++++++++.+++++++||+||||||.+|+.|+++|++|||+|+.+++++++
T Consensus        82 i~~~~~~~~~~~iP~~~--~~~~~~~~ll~~l~i~sl~~~~ill~Gw~SnskYs~iG~~R~~aq~iSYEv~l~l~~l~i~  159 (323)
T MTH00111         82 LALLLALTIWTPLPMPF--PLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSVI  159 (323)
T ss_pred             HHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999988771102443--1001179999999999999999998531358865501088998899888999999999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
                      +.+||+|+.+++++|++             .|+.+..+|++++|+++++||+||+|||+||||||||+|++|||||.+|+
T Consensus       160 ~~~gs~sl~~i~~~q~~-------------~~~~~~~~p~~ii~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~  226 (323)
T MTH00111        160 LLSGGYTLQTLATTQEP-------------LYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFA  226 (323)
T ss_pred             HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHCCCCHHHH
T ss_conf             99568868889999987-------------99999999999999999999818999997742088863300423756699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL  329 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl  329 (348)
                      +++++||.+++++|.+++++|+|||.++...     ..+..|+..|+.++.++++|+|+++||+|+||+|+++||+++|+
T Consensus       227 l~fl~EY~~i~~~s~l~~~lFlg~~~~~~~~-----~~~~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl  301 (323)
T MTH00111        227 LFFLAEYANILLMNTLTTILFLNPSTLNLPP-----ELFTINLMTKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPL  301 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999980887421005-----89999999999999999999998073064999999899999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999997
Q gi|254780860|r  330 SFAMVLIVSFFLKIYT  345 (348)
Q Consensus       330 ~l~~~~~~~~~~~~~~  345 (348)
                      +++++++....+..|+
T Consensus       302 ~l~~~~~~~~~~~~~~  317 (323)
T MTH00111        302 TLALCLWHTSMPISYA  317 (323)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999999976


No 10 
>MTH00071 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=646.71  Aligned_cols=315  Identities=45%  Similarity=0.793  Sum_probs=296.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
                      +.++.++++.+..+++++++++|+|+.|||++||+|+|+||||||+.|++||++|++||+.||++.|+++|++.|..+|.
T Consensus         2 ~~~~~~~i~~~~~~i~vll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~   81 (322)
T MTH00071          2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQTLFILMPT   81 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             78999999999999999999999999999999998658080926764114688999999873574610004999998189


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
                      ++++++.+.|..+|.+...  .|.+.+++++++++++.+++++++||+||||||.+|+.|+++|++|||+++.+++++++
T Consensus        82 i~~~~~~~~~~~~P~~~~~--~~~~~~il~~l~i~sl~~~~i~l~GwsSnskYs~lGa~R~~aq~iSYEv~l~l~~l~~~  159 (322)
T MTH00071         82 MALTLALIIWTPLPMPNTL--SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLI  159 (322)
T ss_pred             HHHHHHHHHHEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998843113565644--36319999999999889999999860459865501089998788775998999999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
                      +.+||+|+.+++.+|+.             .|+.+..+|.+++++++++||+||+|||++|||||||+|+||||||.+|+
T Consensus       160 l~~gs~sl~~i~~~q~~-------------~~~~~~~~~~~~i~fi~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~fa  226 (322)
T MTH00071        160 LLTGSFTLMNFNTTQEF-------------MWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFA  226 (322)
T ss_pred             HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHH
T ss_conf             99458879999999999-------------99999999999999999999828999997753599977578876357789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL  329 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl  329 (348)
                      +++++||.+++++|++.+.+|+|||.+|..     ...+..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+
T Consensus       227 l~flaEY~~i~~~s~l~~~lFlGg~~~~~~-----~~~~~~~~~~k~~~~~~~~i~iR~~~pR~R~Dqlm~~~Wk~llPl  301 (322)
T MTH00071        227 LFFLAEYANILMMNTLSTILFLGSTYNHLQ-----PELSTINLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPI  301 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999664533102-----688999999999999999999986274265999999899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780860|r  330 SFAMVLIVSFFLKIY  344 (348)
Q Consensus       330 ~l~~~~~~~~~~~~~  344 (348)
                      ++++++........+
T Consensus       302 ~l~~li~~~~l~i~~  316 (322)
T MTH00071        302 TLAMTIFHISLPIST  316 (322)
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999998


No 11 
>MTH00104 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=648.17  Aligned_cols=312  Identities=43%  Similarity=0.796  Sum_probs=292.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999727899857445318889999999863054645354038985898999999
Q gi|254780860|r   16 AIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILS   95 (348)
Q Consensus        16 ~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~~   95 (348)
                      +++.+..++.++++++|+||.|||++||+|+|+||||||++|++||++|++||++||+++|+++|++.|..+|+++++++
T Consensus         3 ~i~~l~~~~~vll~vaf~tl~ERKvla~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~l~~~~~   82 (318)
T MTH00104          3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSISMFIIAPILALTLA   82 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             69999999999999999999999999997558180957864021788999999996787701126899999999999999


Q ss_pred             HHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             86653187855235640505789999999999999999875124432101233443101367876689999999982378
Q gi|254780860|r   96 LSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSL  175 (348)
Q Consensus        96 ~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~  175 (348)
                      ...|..+|.+.+  ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+++.++++++++.+||+
T Consensus        83 ~~~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~i~l~GwsS~skYs~iG~~R~~aq~iSYEv~l~l~~~~~~~~~gs~  160 (318)
T MTH00104         83 LTMWIPLPMPYP--LINMNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF  160 (318)
T ss_pred             HHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999734443--103348799999999999999882355159975500598999899998899999999999983678


Q ss_pred             CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             98999998510000221111244666999999899999999768754301003576088889875430232011588999
Q gi|254780860|r  176 NLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAE  255 (348)
Q Consensus       176 ~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~e  255 (348)
                      |+.+++++|++             .|+.+..++++++|+++++||+||+|||++|||||||+|+||||||.+|++++++|
T Consensus       161 sl~~i~~~q~~-------------~~~~~~~~~~~~i~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~fl~E  227 (318)
T MTH00104        161 TLSTLITTQEH-------------LWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAE  227 (318)
T ss_pred             CHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             69999998877-------------99999999999999999999808999997745398865588897038899999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999973236554312236666568999999999999999999974101254999988542789999999999
Q gi|254780860|r  256 YSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVL  335 (348)
Q Consensus       256 y~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~~  335 (348)
                      |.+++++|.+.+++|+|||++|+..     ..+..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+++++++
T Consensus       228 Y~~~~~~s~l~~~lFlGg~~~~~~~-----~~~~~~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~llPl~l~~l~  302 (318)
T MTH00104        228 YANIIMMNALTTILFLGAFHNPYMP-----ELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCM  302 (318)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999995655442026-----78999999999999999999887154331999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999763
Q gi|254780860|r  336 IVSFFLKIYTLI  347 (348)
Q Consensus       336 ~~~~~~~~~~~~  347 (348)
                      +...++..+..+
T Consensus       303 ~~~~~~i~~~~~  314 (318)
T MTH00104        303 WHISLPIMTASI  314 (318)
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999997669


No 12 
>MTH00134 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=642.90  Aligned_cols=318  Identities=46%  Similarity=0.784  Sum_probs=297.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
                      .+++..+++.+..++.++++++|+||.|||++||+|+|+||||||++|++||++|++||+.||++.|+++|++.|.++|.
T Consensus         3 ~~~i~~~i~~l~~~i~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~~P~   82 (324)
T MTH00134          3 STLITHIINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM   82 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999986557180945755113888999999881887600238999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
                      ++++++.+.|..+|.+.  ...|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.+++++++
T Consensus        83 l~~~~~~~~~~~~p~~~--~~~~~~~~ll~~l~l~sl~~~~ill~GwsSnskys~lG~~R~~aq~ISYEv~l~l~~l~~~  160 (324)
T MTH00134         83 LALTLALTLWAPMPMPY--PVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI  160 (324)
T ss_pred             HHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999960444--2213119999999999889999898530469974411298999899876998999999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
                      +.+||+|+.+++.+|++             .|+.+..++.+.+++++++||+||+|||+||||||||+|++|||||.+|+
T Consensus       161 l~~gs~sl~~~~~~q~~-------------~~~~~~~~~l~~i~~i~~laE~~R~PFD~~EaEsELVsG~~tEYsG~~fa  227 (324)
T MTH00134        161 IFTGGFTLQTFNTAQES-------------IWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFA  227 (324)
T ss_pred             HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHH
T ss_conf             99648867899999988-------------99999999999999999999808999997632599975366766348789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL  329 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl  329 (348)
                      +++++||.++++++.+.+++|+|||++|...     ..+..++.+|+.++.++++|+|+++||+|+||+|+++||+++|+
T Consensus       228 l~fl~EY~~i~~~s~l~~~lFlGg~~~p~~~-----~~~~~~~~~k~~~~~~~~i~vR~~~pR~R~Dqlm~~~Wk~llPl  302 (324)
T MTH00134        228 LFFLAEYANILLMNTLSAILFLGASHIPTLP-----ELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPL  302 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999981633000105-----78999999999999999999998255402999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999763
Q gi|254780860|r  330 SFAMVLIVSFFLKIYTLI  347 (348)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~  347 (348)
                      +++++++.......|..+
T Consensus       303 ~l~~l~~~~~l~~~f~~~  320 (324)
T MTH00134        303 TLALVIWHLALPIAFAGL  320 (324)
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             999999999999997779


No 13 
>pfam00146 NADHdh NADH dehydrogenase.
Probab=100.00  E-value=0  Score=648.21  Aligned_cols=307  Identities=54%  Similarity=0.989  Sum_probs=292.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999972789985744531888999999986305464535403898589899999
Q gi|254780860|r   15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVIL   94 (348)
Q Consensus        15 ~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~   94 (348)
                      ++++.+..++.++++++|+||+|||++||+|+|+||||||+.|++||++|+.||++||+++|+++|++.|..+|.+++++
T Consensus         2 ~~i~~~~~~i~vl~~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~~~~~~   81 (309)
T pfam00146         2 ILLNILLLIIPVLLSVAFLTLLERKVLGYMQQRKGPNVVGPLGLLQPFADGLKLFIKEPVVPSTSSPFLFTLAPVLALTL   81 (309)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             80999999999999999999999999999755808097786501199999999987478675312599999999999999


Q ss_pred             HHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98665318785523564050578999999999999999987512443210123344310136787668999999998237
Q gi|254780860|r   95 SLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGS  174 (348)
Q Consensus        95 ~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs  174 (348)
                      +.+.|..+|.+++.  .|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|++++++++++.+||
T Consensus        82 ~~~~~~~iP~~~~~--~~~~~~ll~~l~l~sl~~~~~~l~GwsS~skys~iG~~R~~~q~iSYEi~l~l~~~~~~~~~~s  159 (309)
T pfam00146        82 ALLAWVVLPFPYGL--VDFNLGVLFFLALSSLAVYGVLMSGWASNSKYALLGALRAVAQTISYEVSLGLILLSIIILSGS  159 (309)
T ss_pred             HHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98888621466654--3664359999999888999886100047853147504089884024636799999999998178


Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             89899999851000022111124466699999989999999976875430100357608888987543023201158899
Q gi|254780860|r  175 LNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA  254 (348)
Q Consensus       175 ~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~  254 (348)
                      +|+.+++++|..             .|+.+.+++++++|+++++||+||+|||+||||||+|+|++|||||.+|++++++
T Consensus       160 ~~l~~i~~~q~~-------------~~~~~~~~~~~i~~~i~~lae~~R~PFD~~EaEsELVsG~~tEysG~~f~l~fla  226 (309)
T pfam00146       160 FNLSDIVNAQEL-------------GWNILPQFPLFLMFFISTLAETNRAPFDLPEGESELVAGYNVEYSGGPFALFFLA  226 (309)
T ss_pred             CCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHH
T ss_conf             709999998545-------------8888756778999999999996899998886776714764566546889999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999997323655431223666656899999999999999999997410125499998854278999999999
Q gi|254780860|r  255 EYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMV  334 (348)
Q Consensus       255 ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~  334 (348)
                      ||.++++++++.+.+|+|||++|..     ...+..|+.+|+.++.++++|+|+++||+|+||+++++||+++|++++|+
T Consensus       227 ey~~~~~~s~l~~~lFlGg~~~~~~-----~~~~~~~~~~k~~~~~~~~i~vR~~~pR~R~Dqlm~l~Wk~llpl~l~~l  301 (309)
T pfam00146       227 EYANIILMSLLTSVLFLGGWLPILP-----PELGIIWFVLKTYLLFFLFIWVRASYPRFRYDQLMYLGWKNFLPLSLANL  301 (309)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999997075543210-----35899999999999999999998716035099999999899999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780860|r  335 LIVSFFL  341 (348)
Q Consensus       335 ~~~~~~~  341 (348)
                      ++++..+
T Consensus       302 ~~~~~l~  308 (309)
T pfam00146       302 LFTASLL  308 (309)
T ss_pred             HHHHHHC
T ss_conf             9999831


No 14 
>MTH00218 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=642.42  Aligned_cols=307  Identities=49%  Similarity=0.864  Sum_probs=291.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999972789985744531888999999986305464535403898589899
Q gi|254780860|r   12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS   91 (348)
Q Consensus        12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~   91 (348)
                      ++..+++.+..++++++.++|+||+|||++||+|+|+||||||+.|++||++|+.||+.||++.|+++|++.|..+|.++
T Consensus         2 ~~~~~~~~l~~~i~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~l~   81 (314)
T MTH00218          2 MMLSIINLLLYIIPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSGSSPFLFLLAPILA   81 (314)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             79999999999999999999999999999999865808086786433599999999988378775522599999999999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998665318785523564050578999999999999999987512443210123344310136787668999999998
Q gi|254780860|r   92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC  171 (348)
Q Consensus        92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~  171 (348)
                      ++.+...|.++|.+.+  ..+.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+++.++++++++.
T Consensus        82 ~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~GwsSnSkYs~iG~~R~~aq~iSYEv~l~l~~l~~~~~  159 (314)
T MTH00218         82 LTLALLLWMPLPLPHS--FINLNLGLLFILAISSLSVYSILGSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLVIL  159 (314)
T ss_pred             HHHHHHHHHHCCCCCC--HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999974256631--11134228899999757899999874256897656412089999956768999999999998


Q ss_pred             HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf             23789899999851000022111124466699999989999999976875430100357608888987543023201158
Q gi|254780860|r  172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF  251 (348)
Q Consensus       172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~  251 (348)
                      +||+|+.+++++|++             .|.....++++++|+++++||+||+|||++|||||||+|+||||||.+|+++
T Consensus       160 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~i~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsG~~fal~  226 (314)
T MTH00218        160 AGGFTLSTFNYYQET-------------IWLLGPFWPLAVMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALF  226 (314)
T ss_pred             CCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHCCHHHHHH
T ss_conf             079867999998635-------------9999878899999999999997889999887672312123999645377999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999997323655431223666656899999999999999999997410125499998854278999999
Q gi|254780860|r  252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF  331 (348)
Q Consensus       252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l  331 (348)
                      +++||.+++++|++.+.+|+|||++            ..++.+|+.++.++++|+|+++||+|+||+|+++||+++|+++
T Consensus       227 fl~EY~~i~~~s~l~~~lFlgg~~~------------~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~~~Wk~llPl~l  294 (314)
T MTH00218        227 FLAEYMNILFMNTLSVILFLGSSLT------------LLSLMLKATLLVFLFLWVRASYPRFRYDQLMHLAWKNFLPLVL  294 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999674276------------8999999999999999999637316499999988899999999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999997
Q gi|254780860|r  332 AMVLIVSFFLKIYT  345 (348)
Q Consensus       332 ~~~~~~~~~~~~~~  345 (348)
                      +|++++......+.
T Consensus       295 ~~l~~~~~l~l~~~  308 (314)
T MTH00218        295 ALLLLHLSLPLAFG  308 (314)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999999977


No 15 
>MTH00143 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=641.97  Aligned_cols=304  Identities=42%  Similarity=0.730  Sum_probs=288.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999997278998574453188899999998630546453540389858989999
Q gi|254780860|r   14 FMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVI   93 (348)
Q Consensus        14 ~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~   93 (348)
                      ..+++.+..++.++++++|+||+|||++||+|+|+||||+|+.|++||++|++||+.||++.|+++|++.|..+|.++++
T Consensus         2 ~~li~~~~~~~~vl~~vaf~~l~ERKi~a~~Q~R~GP~~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~i~~~   81 (306)
T MTH00143          2 VELLSSVVTYVCVLLAVAFFTLLERKGLGYFQLRKGPNKVGLMGLPQPLADAVKLFSKELVKPTLSNKFLFFLAPFLSLF   81 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             88999999999999999999999999999976571809778654459999999998866777530059999997999999


Q ss_pred             HHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99866531878552356405057899999999999999998751244321012334431013678766899999999823
Q gi|254780860|r   94 LSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAG  173 (348)
Q Consensus        94 ~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~g  173 (348)
                      ++...|.++|.+.  ...+.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.+|
T Consensus        82 ~~~~~~~~~P~~~--~~~~~~~~ll~~l~l~sl~~~~~~l~Gw~S~skYs~lG~~R~~~q~iSYEi~l~l~~l~~~~~~g  159 (306)
T MTH00143         82 LALLLWQLYPSYF--SCSYFGWGMLLFLCVSSLNVYGVMLAGWSSNSKYALLGAVRAVAQSISYEVSMSLILLFPLLLSG  159 (306)
T ss_pred             HHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9988870234666--41003410689998888888987760566888332406759998656664779999999999807


Q ss_pred             CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             78989999985100002211112446669999998999999997687543010035760888898754302320115889
Q gi|254780860|r  174 SLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFML  253 (348)
Q Consensus       174 s~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l  253 (348)
                      |+|+.+++++|.+             .|+.+.+++++++|+++++||+||.|||+||||||+|+|++|||||.+|+++++
T Consensus       160 s~~l~~i~~~q~~-------------~~~~~~~~~~~~~~~i~~lae~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~fl  226 (306)
T MTH00143        160 SFSFQEVSESQFS-------------VWLGFLNFPVMLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFL  226 (306)
T ss_pred             CCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHCCHHHHHHHH
T ss_conf             7516899998888-------------999999999999999999999788999999764000341212315678999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999732365543122366665689999999999999999999741012549999885427899999999
Q gi|254780860|r  254 AEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAM  333 (348)
Q Consensus       254 ~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~  333 (348)
                      +||.+++++|++.+.+|+|||.++        +.+..|+.+|+..+.++++|+|+++||+|+||+|+++||+++|++++|
T Consensus       227 ~ey~~~~~~s~l~~~lFlGg~~~~--------~~~~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl~l~~  298 (306)
T MTH00143        227 AEYGNILFMSVLTVVLFFGGSVFS--------LLSGILFSLKVLLFAFLFIWVRASYPRYRYDLLMMLCWKSFLPFSLSI  298 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999985651212--------367999999999999999999863712649999998879999999999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780860|r  334 VLIVSFF  340 (348)
Q Consensus       334 ~~~~~~~  340 (348)
                      ++++.+.
T Consensus       299 l~~~~~l  305 (306)
T MTH00143        299 LVLFVLL  305 (306)
T ss_pred             HHHHHHH
T ss_conf             9999997


No 16 
>MTH00193 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=635.86  Aligned_cols=303  Identities=44%  Similarity=0.801  Sum_probs=286.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999972789985744531888999999986305464535403898589899
Q gi|254780860|r   12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS   91 (348)
Q Consensus        12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~   91 (348)
                      ++.++++.+..++.+++.++|+||.|||++||+|+|+||||+|+.|++||++|++||+.||++.|+++|++.|..+|.++
T Consensus         1 ~l~~~~~~l~~~~~vl~~vaf~tl~ERKila~~Q~R~GP~~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~~~   80 (306)
T MTH00193          1 MMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTFPLMSNYLLYYFSPVFS   80 (306)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             98999999999999999999999999999999655808095786621488999999988567750122699999999999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998665318785523564050578999999999999999987512443210123344310136787668999999998
Q gi|254780860|r   92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC  171 (348)
Q Consensus        92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~  171 (348)
                      ++++.+.|.++|++.+  ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.
T Consensus        81 ~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~Gw~S~skYs~iG~~R~~~q~iSyEv~l~l~i~~~~~~  158 (306)
T MTH00193         81 LFLSLLVWLIYPFLFG--LISFNLGILFFLCCSSLGVYTIMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFL  158 (306)
T ss_pred             HHHHHHHHHHHHCCCH--HHHCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999860122--45401899999999998988877202346887562738899999999889899999999999


Q ss_pred             HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf             23789899999851000022111124466699999989999999976875430100357608888987543023201158
Q gi|254780860|r  172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF  251 (348)
Q Consensus       172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~  251 (348)
                      +||+|+.+++++|++             .|+.+.+++++++|+++++||+||.|||+||||||+|+|++|||||.+|+++
T Consensus       159 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~~~~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~  225 (306)
T MTH00193        159 IGSFNLLDFSLFQEY-------------IWFIFFMFPLFLIWLVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI  225 (306)
T ss_pred             HCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHH
T ss_conf             657869999999888-------------9999999999999999999996899999885509887205451075669999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999997323655431223666656899999999999999999997410125499998854278999999
Q gi|254780860|r  252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF  331 (348)
Q Consensus       252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l  331 (348)
                      +++||.++++++.+.+.+|+|||.+            ..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+++
T Consensus       226 fl~Ey~~~~~~s~l~~~lFlgg~~~------------~~~f~lk~~~~~~~~i~vR~~~pR~R~Dqlm~~~Wk~llpl~l  293 (306)
T MTH00193        226 FLAEYSSILFMSMLTSLMFLGGDLL------------SLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSL  293 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999575277------------8999999999999999998636012099999988999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780860|r  332 AMVLIVSFFL  341 (348)
Q Consensus       332 ~~~~~~~~~~  341 (348)
                      +|+++....+
T Consensus       294 ~~l~~~~~l~  303 (306)
T MTH00193        294 NYLLFFFGLK  303 (306)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 17 
>MTH00010 ND1 NADH dehydrogenase subunit 1; Validated
Probab=100.00  E-value=0  Score=635.45  Aligned_cols=306  Identities=41%  Similarity=0.711  Sum_probs=285.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999972789985744531888999999986305464535403898589899999
Q gi|254780860|r   15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVIL   94 (348)
Q Consensus        15 ~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~   94 (348)
                      ..++.+...+.+++.++|+|++|||++||+|+|+||||||+.|++||++|++||+.||++.|+++|+..|.++|.++++.
T Consensus         5 ~~~~~l~~~i~~ll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~~~~~~   84 (311)
T MTH00010          5 FFTSILISYIMALLAMAFYTLLERKALGYFQLRKGPNKVGLMGIPQPFADAIKLFTKEQAKPMPANYTPFLLAPMMSLIL   84 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999654808096673564599999999987067775420499999999999999


Q ss_pred             HHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98665318785523564050578999999999999999987512443210123344310136787668999999998237
Q gi|254780860|r   95 SLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGS  174 (348)
Q Consensus        95 ~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs  174 (348)
                      +...|.++|.+++..  +.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.+||
T Consensus        85 ~~~~~~~~P~~~~~~--~~~~~ll~~l~l~sl~~~~~~l~GwsS~skYs~iGa~R~~aq~iSYEv~l~l~~~~~~~~~~s  162 (311)
T MTH00010         85 ALLLWSLYPFSHPSF--FLKFSVLYFLCISSMNVYTTLAAGWSSNSKYALLGALRSVAQTISYEVSMSLILLSALCLLLS  162 (311)
T ss_pred             HHHHHHHHCCCCCHH--HHCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999998704565125--523029999998889998867025445886477407588999997788899999999999667


Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             89899999851000022111124466699999989999999976875430100357608888987543023201158899
Q gi|254780860|r  175 LNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA  254 (348)
Q Consensus       175 ~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~  254 (348)
                      +|+.+++++|..              |..+..+|.+++|+++++||+||+|||++|||||+|+|+||||||.+|++++++
T Consensus       163 ~~l~~i~~~q~~--------------~~~~~~~p~~~~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~l~fla  228 (311)
T MTH00010        163 FDFSKMITNQYS--------------WILLMTIPLFFSWFITTLAETNRTPFDLAEGESELVSGFNVEYSSGLFALIFMA  228 (311)
T ss_pred             CCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEHHHCCCHHHHHHHHH
T ss_conf             869999999999--------------999999999999999999983899999886526562121232178789999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999997323655431223666656899999999999999999997410125499998854278999999999
Q gi|254780860|r  255 EYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMV  334 (348)
Q Consensus       255 ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~  334 (348)
                      ||.+++++|.+.+.+|+||+.++        ..+..++.+|+..+.++++|+|+++||+|+||+|+++||+++|++++|+
T Consensus       229 EY~~~~~~s~l~~~lFlg~~~~~--------~~~~~~~~lk~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPlsl~~l  300 (311)
T MTH00010        229 EYANILIMCLFSSAIFMSSSPTF--------FISDAMLILKTFTLAFLFVWIRATFPRMRYDHLMNLTWKSFLPMSLTSL  300 (311)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999972877301--------4789999999999999999999827446199989987899999999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780860|r  335 LIVSFFLKIY  344 (348)
Q Consensus       335 ~~~~~~~~~~  344 (348)
                      +++..++.++
T Consensus       301 ~~~~~i~l~~  310 (311)
T MTH00010        301 MISISIMLLF  310 (311)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999996


No 18 
>MTH00195 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=639.62  Aligned_cols=305  Identities=44%  Similarity=0.800  Sum_probs=289.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999972789985744531888999999986305464535403898589899
Q gi|254780860|r   12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS   91 (348)
Q Consensus        12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~   91 (348)
                      ++..+++.+..++.++++++|+||+|||++||+|+|+||||||+.|++||++|+.||+.||++.|+++|+..|..+|.+.
T Consensus         1 m~~~~i~~l~~~i~~ll~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~aP~i~   80 (307)
T MTH00195          1 MILSIIYFLIQIVPILLAVAFFTLLERKVLGYIQLRKGPNKVGPYGLLQPIADAVKLLLKELVSPSNSNKWGFLLAPILG   80 (307)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             96999999999999999999999999999999974808085674464699999999988088276653178999989999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998665318785523564050578999999999999999987512443210123344310136787668999999998
Q gi|254780860|r   92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC  171 (348)
Q Consensus        92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~  171 (348)
                      ++.+.+.|..+|.+.+  ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.
T Consensus        81 ~~~~~~~~~~~p~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~GwsS~skys~lG~~R~~~q~iSYEi~l~l~~l~~~~~  158 (307)
T MTH00195         81 LVLALIFWVNIPSPFG--FSSLNYGVLFFLCVSSLSVYSTLMSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPLLL  158 (307)
T ss_pred             HHHHHHHHHCCCCCCC--CEECCHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999988850246755--40134348999998500455302147767882214147799988767768699999999999


Q ss_pred             HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf             23789899999851000022111124466699999989999999976875430100357608888987543023201158
Q gi|254780860|r  172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF  251 (348)
Q Consensus       172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~  251 (348)
                      +||+|+.+++++|.+             .|+.+.+++++++|+++++||+||.|||+||||||||+|++|||||.+|+++
T Consensus       159 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~~i~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~  225 (307)
T MTH00195        159 AGSFDFEIMLISQSF-------------FWFVLLFPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYGGGPFALI  225 (307)
T ss_pred             HCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHCCHHHHHH
T ss_conf             378879999999999-------------9999998789999999999996899999987876704556799735899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999997323655431223666656899999999999999999997410125499998854278999999
Q gi|254780860|r  252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF  331 (348)
Q Consensus       252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l  331 (348)
                      +++||.++++++++.+.+|+|||+++             |+.+|+..+.++++|+|+++||+|+||+|+++||+++|+++
T Consensus       226 fl~Ey~~~~~~s~l~~~lFlGg~~~~-------------~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~llPl~l  292 (307)
T MTH00195        226 FMAEYMNIIFMSVLTAILFFGGGSTI-------------MLWVKSLFVSFVFLWVRGSLPRFRYDQLMGLTWKCYLPLVL  292 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHH-------------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999985422789-------------99999999999999999727316399989988899999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780860|r  332 AMVLIVSFFLKIY  344 (348)
Q Consensus       332 ~~~~~~~~~~~~~  344 (348)
                      +|++++..++..+
T Consensus       293 ~~l~~~~~l~~~~  305 (307)
T MTH00195        293 SLLIVLIVLMFAL  305 (307)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999980


No 19 
>MTH00159 consensus
Probab=100.00  E-value=0  Score=635.05  Aligned_cols=301  Identities=44%  Similarity=0.775  Sum_probs=285.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999972789985744531888999999986305464535403898589899999
Q gi|254780860|r   15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVIL   94 (348)
Q Consensus        15 ~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~   94 (348)
                      ++++.+..++.+++.++|+||+|||++||+|+|+||||||+.|++||++|++||+.||+++|+++|+..|..+|.+++++
T Consensus         1 mli~~~~~~i~vl~~vaf~tl~ERKila~~Q~R~GP~~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~~~~~~   80 (307)
T MTH00159          1 MLINYLLLIICVLVSVAFLTLLERKILGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNFLLYYFSPVFSLFL   80 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             95999999999999999999999999998546808095786621388899999998577675302588999878999999


Q ss_pred             HHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98665318785523564050578999999999999999987512443210123344310136787668999999998237
Q gi|254780860|r   95 SLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGS  174 (348)
Q Consensus        95 ~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs  174 (348)
                      +.+.|.++|.+.+  ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.+||
T Consensus        81 ~~~~~~~~P~~~~--~~~~~~~ll~~l~l~sl~~~~i~l~Gw~S~skYs~iG~~R~~~q~iSYEi~l~l~l~~~~~~~gs  158 (307)
T MTH00159         81 SLLVWLLYPFNFN--LINFNLGILFFLCCSSLGVYTILIAGWSSNSKYALLGSLRGVAQTISYEVSLALILLSFIFLIGS  158 (307)
T ss_pred             HHHHHHHHHHCCH--HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999740220--12011889999999999999989830037996453368899989988889899999999999758


Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             89899999851000022111124466699999989999999976875430100357608888987543023201158899
Q gi|254780860|r  175 LNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA  254 (348)
Q Consensus       175 ~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~  254 (348)
                      +|+.+++++|++             .|..+.+++++++|+++++||+||.|||+||||||+|+|++|||||.+|++++++
T Consensus       159 ~~l~~i~~~q~~-------------~~~~~~~~~~~~~~~i~~laE~~R~PFD~~EaEsELVsG~~tEYsg~~fal~fl~  225 (307)
T MTH00159        159 YNLLDFSKYQKY-------------FWFIFFMFPLFLIWLVSCLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLA  225 (307)
T ss_pred             CCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             879999999878-------------8899999999999999999996799999885528884562031175768999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999997323655431223666656899999999999999999997410125499998854278999999999
Q gi|254780860|r  255 EYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMV  334 (348)
Q Consensus       255 ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~  334 (348)
                      ||.++++++++++.+|+|||.+            ..|+.+|+.++.++++|+|+++||+|+||+++++||+++|++++|+
T Consensus       226 Ey~~~~~~s~l~~~lFlgg~~~------------~~~f~lk~~~~~~~~i~vR~~~PR~R~Dqlm~l~Wk~llPl~l~~l  293 (307)
T MTH00159        226 EYSSILFMSMLFSIMFLGGDPL------------SILFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNYL  293 (307)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999685378------------8999999999999999999716221099999988899999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780860|r  335 LIVSFFLK  342 (348)
Q Consensus       335 ~~~~~~~~  342 (348)
                      ++....+.
T Consensus       294 ~~~~~~~~  301 (307)
T MTH00159        294 LFFFGLKI  301 (307)
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 20 
>MTH00058 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=622.74  Aligned_cols=292  Identities=31%  Similarity=0.524  Sum_probs=271.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999727899857445318889999999863054645354038985898999
Q gi|254780860|r   13 FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSV   92 (348)
Q Consensus        13 ~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~   92 (348)
                      +..+++.+..++.++++++|+||.|||++||+|+|+||||||+.|++||++|++||++||++.|+++|+..+..+|.+.+
T Consensus         3 ~~~li~~l~~~l~vll~vaf~tl~ERKvla~iQ~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~~~~~~~~~~~~~~~~~~   82 (296)
T MTH00058          3 IFGLVSGLEGLLLILLLVAFFILGERKVLGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVFGFQSRSWFSLFGVFLLV   82 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999998758080846854444888999999894646654368899999899999


Q ss_pred             HHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99986653187855235640505789999999999999999875124432101233443101367876689999999982
Q gi|254780860|r   93 ILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCA  172 (348)
Q Consensus        93 ~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~  172 (348)
                      .++...|...|..  ....|.+.+++++++++++++|+++++||+||||||.+|+.|+++|++|||+|++++++.+++.+
T Consensus        83 ~~~~~~~~~~~~~--~~~~~~~~~ll~~l~l~sl~vy~ill~GwsSnskYs~lG~~R~~aQ~ISYEv~l~l~~l~~~l~~  160 (296)
T MTH00058         83 LLVVFYCFIYGSY--YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCY  160 (296)
T ss_pred             HHHHHHHHHHCCC--CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999983367--53321228999999997014765350187526688877999999999888999999999999982


Q ss_pred             CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf             37898999998510000221111244666999999899999999768754301003576088889875430232011588
Q gi|254780860|r  173 GSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFM  252 (348)
Q Consensus       173 gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~  252 (348)
                      ||+|..++++.|.               |.++.+|+++++|+++++||+||+|||+||||||||+|+||||||.+|++++
T Consensus       161 gs~~~~~~~~~~~---------------~~~~~~p~~fiif~i~~lAE~nR~PFDl~EaESELVsG~~tEYsg~~F~l~f  225 (296)
T MTH00058        161 GSYSLVDFFSSIW---------------SSILIFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLF  225 (296)
T ss_pred             CCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCEEEEECCHHHHHHH
T ss_conf             8992899999999---------------9999999999999999999848999998740367750000134665889999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999973236554312236666568999999999999999999974101254999988542789999999
Q gi|254780860|r  253 LAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFA  332 (348)
Q Consensus       253 l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~  332 (348)
                      ++||.+++++|++.+.+|+|||.++                .|.....++++|+|+++||+|+||+|+++||+++|++++
T Consensus       226 l~EY~~~~~~s~l~~~lFlGg~~~~----------------~~~~~~~~~~iw~R~~~PR~R~Dqlm~l~Wk~lLPlsl~  289 (296)
T MTH00058        226 ACEYLIIFIFSWLSSVLFFGGGFVL----------------IMLLFHLLFFMWARGTLPRVRYDYFVNFFWEYCLVLLIL  289 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHH----------------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999996336889----------------999999999999997286166999899778999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780860|r  333 MVLIV  337 (348)
Q Consensus       333 ~~~~~  337 (348)
                      |++++
T Consensus       290 ~l~~~  294 (296)
T MTH00058        290 SLFVI  294 (296)
T ss_pred             HHHEE
T ss_conf             88246


No 21 
>KOG4770 consensus
Probab=100.00  E-value=0  Score=606.93  Aligned_cols=309  Identities=50%  Similarity=0.919  Sum_probs=290.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999727899857445318889999999863054645354038985898999
Q gi|254780860|r   13 FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSV   92 (348)
Q Consensus        13 ~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~   92 (348)
                      +......+..+++++.+++|.+|.|||++|.+|+|+||||||+.|++||++|+.||++||+..|.++|...|.++|.+++
T Consensus         3 I~v~~~illlii~il~~vafl~l~ERkilg~iQ~RkGP~~vg~~GllQplaDg~KL~~KE~l~P~~sn~~lf~i~P~~s~   82 (315)
T KOG4770           3 ILVLAMILLLIIPILQSVAFLTLLERKILGYIQNRKGPNKVGPMGLLQPLADGVKLLTKEQLTPLNSNEVLFLIAPGISF   82 (315)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHH
T ss_conf             08899999999999999999999999999999862298613641014777778888851778777678423341437999


Q ss_pred             HHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99986653187855235640505789999999999999999875124432101233443101367876689999999982
Q gi|254780860|r   93 ILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCA  172 (348)
Q Consensus        93 ~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~  172 (348)
                      ..++..|.++|+..  +..|.|.|++++++++|+++|+++++||+||||||.+||.|+++|++|||+++.++++++.+..
T Consensus        83 ~~~ll~w~~lPf~~--~l~~lnig~lf~la~ssl~vy~ilisGw~SnskYa~lGaLRA~AQsISYEvsl~LilLsiii~~  160 (315)
T KOG4770          83 VLSLLEWFVLPFFN--VLISLNIGLLFFLAISSLAVYTILISGWSSNSKYAFLGALRAAAQSISYEVSLALILLSIIILS  160 (315)
T ss_pred             HHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999996167643--0133027799999986525264113211367605888899998766113365999999999983


Q ss_pred             CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf             37898999998510000221111244666999999899999999768754301003576088889875430232011588
Q gi|254780860|r  173 GSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFM  252 (348)
Q Consensus       173 gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~  252 (348)
                      ||+|+++++.+|.+             .|+.+...|.+++|+++.+||+||.|||+||||+|+|+|+|+|||+..|+++|
T Consensus       161 gs~n~~~i~~aQ~~-------------lW~li~~~P~~~m~~issLAEtnR~PFDl~EgE~ELVaGfnvEys~~~faLff  227 (315)
T KOG4770         161 GSFNLSDIFVAQFN-------------LWLLIILFPFAIMFFISSLAETNRAPFDLPEGESELVAGFNVEYSSGGFALFF  227 (315)
T ss_pred             CCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEECCCCEEEHH
T ss_conf             87606899999989-------------99999998999999999999855899888642899860446354267522016


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999973236554312236666568999999999999999999974101254999988542789999999
Q gi|254780860|r  253 LAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFA  332 (348)
Q Consensus       253 l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~  332 (348)
                      ++||.++..+|.+.+++|+|||.+......+.     .++..|+....++++|+|+++||+|+||+|+++||.++|++++
T Consensus       228 laeY~nli~ms~l~t~lflggw~p~l~~elf~-----~~~~~k~~~~~fl~IwiR~t~PR~RyDqLM~L~Wk~fLpiSL~  302 (315)
T KOG4770         228 LAEYANLIFMSVLSTVLFLGGWSPYLILELFS-----FIFIFKTFLILFLFIWIRSTYPRYRYDQLMSLGWKKFLPISLA  302 (315)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98888999999999984057775310178999-----9999999999999999983370556999998899998688999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254780860|r  333 MVLIVSFFL  341 (348)
Q Consensus       333 ~~~~~~~~~  341 (348)
                      +++.++.+.
T Consensus       303 ~L~~~~~~~  311 (315)
T KOG4770         303 MLLFYASFF  311 (315)
T ss_pred             HHHHHHHHH
T ss_conf             999998752


No 22 
>MTH00090 ND1 NADH dehydrogenase subunit 1; Provisional
Probab=100.00  E-value=0  Score=604.61  Aligned_cols=283  Identities=36%  Similarity=0.665  Sum_probs=264.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999999972789985744531888999999986305464535403898589899999986
Q gi|254780860|r   18 KSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILSLS   97 (348)
Q Consensus        18 ~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~~~~   97 (348)
                      +.+..+++++++++|+||.|||++||+|+|+||||+|+.|++||++|++||++||++.|+++|+..|..+|.++++++..
T Consensus         2 ~~~~~~~~vl~~vaf~tl~ERK~la~~Q~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~~P~~~~~~~~~   81 (285)
T MTH00090          2 EVLLMMIFILQSIAFFTLYERHLLGLSQNRLGPNKVSFMGVLQAILDGVKLLKKEQLTPLNSSDLSFLLVPGVSFVVMYL   81 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             21999999999999999999999999765818094683564499999999998467774521599999999999999999


Q ss_pred             HHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             65318785523564050578999999999999999987512443210123344310136787668999999998237898
Q gi|254780860|r   98 AWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNL  177 (348)
Q Consensus        98 ~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~  177 (348)
                      .|..+|.+..  ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.+||+|.
T Consensus        82 ~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~i~l~Gw~S~skYs~iG~~R~~aq~iSYEi~l~l~~~~~~l~~gs~~~  159 (285)
T MTH00090         82 EWFVLPYFFD--FINFEYSVLFFLCLIGFSVYTTLLSGWVSKSKYSFLGAIRASSQSISYEIAFSLYLLCFILHNNSFCF  159 (285)
T ss_pred             HHHHCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             9997146432--10565259999999988999999878543884145527589999999999999999999999777539


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999851000022111124466699999989999999976875430100357608888987543023201158899999
Q gi|254780860|r  178 TDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEYS  257 (348)
Q Consensus       178 ~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~ey~  257 (348)
                      .+.                     +...+++++++|+++++||+||+|||++|||||||+|+||||||.+|++++++||.
T Consensus       160 ~~~---------------------~~~~~~~~~~~f~i~~lae~nR~PFDl~EaEsELVsG~~tEYsg~~f~l~fl~EY~  218 (285)
T MTH00090        160 SSS---------------------FSLSLFVIYLPFLIMILAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYG  218 (285)
T ss_pred             HHH---------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf             999---------------------99999999999999999986899999884067887000002655789999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999997323655431223666656899999999999999999997410125499998854278999999999999
Q gi|254780860|r  258 TIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIV  337 (348)
Q Consensus       258 ~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~~~~  337 (348)
                      ++++++.+.+++|+|++                  ..|...+.++++|+|+++||+|+||+|+++||+++|+++.|++++
T Consensus       219 ~~~~~s~l~~~lFlg~~------------------~~~~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl~l~~l~~~  280 (285)
T MTH00090        219 SLIFFSVLMSFLFFKFS------------------FFMLFLIFSLLIFIRSCYPRFRYDMMMSLFWFKFLPLSLIFLGFF  280 (285)
T ss_pred             HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998589------------------999999999999999918507699999987899999999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780860|r  338 SFFL  341 (348)
Q Consensus       338 ~~~~  341 (348)
                      ...+
T Consensus       281 ~~l~  284 (285)
T MTH00090        281 VVLF  284 (285)
T ss_pred             HHHH
T ss_conf             9995


No 23 
>COG0650 HyfC Formate hydrogenlyase subunit 4 [Energy production and conversion]
Probab=100.00  E-value=0  Score=408.14  Aligned_cols=304  Identities=28%  Similarity=0.404  Sum_probs=272.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999972789985744531888999999986305464535403898589899
Q gi|254780860|r   12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS   91 (348)
Q Consensus        12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~   91 (348)
                      +...++..+...+.++.....+.+++||+.||+|+|+||+      ++||++|.+|++.||.+.|.++. ++|+.+|++.
T Consensus         3 ~~~~vi~~l~~~~~a~lv~~l~~GI~RKv~ARiq~R~GPp------i~Qp~~d~lKll~Ke~v~P~~s~-~lf~~~P~~~   75 (309)
T COG0650           3 MLMSVIGALLQLIIAFLVAPLLSGITRKVRARIQRRIGPP------ILQPYYDTLKLLGKETVIPASSG-WLFRLAPYLA   75 (309)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHH
T ss_conf             0899999999999999999998769999999996589997------00789999999611411678855-6999999999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998665318785523564050578999999999999999987512443210123344310136787668999999998
Q gi|254780860|r   92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC  171 (348)
Q Consensus        92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~  171 (348)
                      +....+....+|.+... ......|++.+.++.++..++..++|.+|+|||+.+|++||+.++...|+|+.+++++++..
T Consensus        76 ~g~~~~~a~iiPl~~~~-~l~~~~dii~~~~Ll~l~~~~~~l~~~~sGspf~~iGasR~~~~~~~~E~~l~~~~~~~~~~  154 (309)
T COG0650          76 LGTLLLLALIIPLVFVG-PLAPLGDLIVLLYLLELARFFLALAGLSSGSPFGGIGASRELTLIALVEPPLLLVLFALALV  154 (309)
T ss_pred             HHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999981134555-76441229999999999999999852146998542039999999998768999999999999


Q ss_pred             HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf             23789899999851000022111124466699999989999999976875430100357608888987543023201158
Q gi|254780860|r  172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF  251 (348)
Q Consensus       172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~  251 (348)
                      +||.|+++++.+|+.|++....          .....+++++++.+..|++|.|||++|+|+|+++|+++||||+++|+.
T Consensus       155 ~gs~~i~~i~~~~~~h~~~~~s----------l~~vl~aia~fi~~~~e~gk~Pfdi~~~~~eI~eGpl~EysGk~lai~  224 (309)
T COG0650         155 AGSTNISDIVAYQAHHGPLLFS----------LPLVLAAIAFFILLFIETGKLPFDIAEAETEIIEGPLTEYSGKLLALL  224 (309)
T ss_pred             HCCCCHHHHHHHHHHCCCHHCC----------HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf             5688799999888626560036----------779999999999999990899887421478885130555325676999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999997323655431223666656899999999999999999997410125499998854278999999
Q gi|254780860|r  252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF  331 (348)
Q Consensus       252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l  331 (348)
                      +++|+.|.++..++++.+|+|+|..+-.  ....+...++.+.|..++..+...+|+++||+|+||..++.|+...-..+
T Consensus       225 ~~a~~ik~f~l~~lf~~vFlgp~~~~~~--~~~~l~~iv~~l~k~lvl~vi~a~~~~~~~rlr~~q~~~~~~~~~~~~~l  302 (309)
T COG0650         225 KWAEAIKQFVLLSLFVNVFLGPWGLIET--IIAGLTALVVTLLKALVLTVLAALFEATLARLRLFQVVKFLWTAFFLAAL  302 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999998255323431--35679999999999999999999998641652187776799999999999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780860|r  332 AMVL  335 (348)
Q Consensus       332 ~~~~  335 (348)
                      .+.+
T Consensus       303 ~~~~  306 (309)
T COG0650         303 AFAL  306 (309)
T ss_pred             HHHH
T ss_conf             9999


No 24 
>TIGR01972 NDH_I_M proton-translocating NADH-quinone oxidoreductase, chain M; InterPro: IPR010227   This entry describes the 13th (based on Escherichia coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=93.44  E-value=0.54  Score=25.01  Aligned_cols=136  Identities=20%  Similarity=0.385  Sum_probs=88.3

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHH-----CCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
Q ss_conf             05057899999999999999998751-----2443---------21012334431013678766899999999823----
Q gi|254780860|r  112 DINVGILYILAISSLEIYGIIIGGWA-----SNSK---------YAFLGALRSAAQMISYEVSIGLVIVTVVLCAG----  173 (348)
Q Consensus       112 ~~~~~ll~~~~l~sl~~~~i~l~G~~-----S~s~---------ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~g----  173 (348)
                      ..|.-++|++.=..+-+..++++-|+     -+++         |++.|           -+.+..+++......|    
T Consensus       139 A~D~~LFY~FwE~~LiPmyllIg~WGdka~~g~~R~yAA~KFfLYTl~G-----------SvlML~a~l~l~~~~g~~~~  207 (532)
T TIGR01972       139 ALDLLLFYVFWEAMLIPMYLLIGVWGDKAEAGPNRIYAAMKFFLYTLAG-----------SVLMLLAILGLYFLGGTQLL  207 (532)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCCE
T ss_conf             9989999999999998899998641100136465237889999999999-----------99999999999998234111


Q ss_pred             --CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH
Q ss_conf             --789899999851000022111124466699999989999999976875430100--3576088-------88987543
Q gi|254780860|r  174 --SLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE  242 (348)
Q Consensus       174 --s~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE  242 (348)
                        |+|+.+..+.+.+..              .-.+-.+++.|+++.-.++-=-||.  +|+||+|       +.+|..--
T Consensus       208 ~~tF~l~~l~~~~~~~~--------------~~~q~~Lf~aFf~aFAvK~PlfPlHTWLPDAH~~Apt~gSV~LaGvLlK  273 (532)
T TIGR01972       208 ILTFDLAELLNQPVNLP--------------LSVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLK  273 (532)
T ss_pred             EECCCHHHHHCCCCCCH--------------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH
T ss_conf             21034288740213641--------------9999999999999855224776653343203102774689999999998


Q ss_pred             HCCCCHHHHHHH--------HHHHHHHHHHHHHHHHCCCC
Q ss_conf             023201158899--------99999999999997323655
Q gi|254780860|r  243 YSSTPYLLFMLA--------EYSTIVLMCTLASILFLGGW  274 (348)
Q Consensus       243 YsG~~~~l~~l~--------ey~~~~~~s~l~~~lFlGg~  274 (348)
                      -++  +|+++.+        +|...++...-.+...=|+|
T Consensus       274 ~G~--YGflRf~LpLfPdas~~f~p~~~~L~~~~IiYgal  311 (532)
T TIGR01972       274 MGT--YGFLRFNLPLFPDASLYFAPVLAALAVIAIIYGAL  311 (532)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             888--99999876544999999999999999999999999


No 25 
>PRK08668 NADH dehydrogenase subunit M; Validated
Probab=78.47  E-value=4.7  Score=19.39  Aligned_cols=65  Identities=12%  Similarity=0.099  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999999999999987512443210123344310136787668999999998237898999998510
Q gi|254780860|r  118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKS  186 (348)
Q Consensus       118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~  186 (348)
                      +...-+++++.|.++  ++.  ++.+.-++.|.......-...+.+.+..+...+||+|+.++.+...+
T Consensus       128 fvfwEl~~l~sylLI--~~~--~~~a~~Aa~kyfi~~~vG~~~~L~gi~lly~~~Gt~~~~~i~~~l~~  192 (616)
T PRK08668        128 FIFWEIAVLGSFMIV--PMG--KKESRKASLKYFVLSAIGAYAMLFAIFLIYAKYGTFSFDEISQALLN  192 (616)
T ss_pred             HHHHHHHHHHHHHHH--HHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             999999999999977--729--83899999999999999999999999999999786349999999851


No 26 
>pfam00361 Oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=76.46  E-value=5.3  Score=19.04  Aligned_cols=97  Identities=15%  Similarity=0.170  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             99999999999999875124432101233443101367876689999999982378989999985100002211112446
Q gi|254780860|r  120 ILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSML  199 (348)
Q Consensus       120 ~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~  199 (348)
                      ..-+.+++.|.  +.+.-.+++-+.-++.|......--...+...+......+||.|..++.+...+..           
T Consensus        10 ~~El~~l~~y~--Li~~~~~~~~~~~Aa~ky~i~~~~~s~~lL~gi~~ly~~~gt~~~~~~~~~~~~~~-----------   76 (270)
T pfam00361        10 GWELLGLPSYL--LIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLTGSLSFTLLFLFGLNSN-----------   76 (270)
T ss_pred             HHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCH-----------
T ss_conf             99999999999--98834999999999999999999999999999999999862226999986435634-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHH
Q ss_conf             66999999899999999768754301003--576088
Q gi|254780860|r  200 DWYWLALFPMFVVFFISLLAETNRPPFDL--SEAESE  234 (348)
Q Consensus       200 ~~~~~~~~~~~~~f~i~~lae~~R~PFD~--~EaEsE  234 (348)
                           ....+....+++...+..-.||..  ||+++|
T Consensus        77 -----~~~~~~~l~~~g~~~K~~~~PfH~Wlpday~~  108 (270)
T pfam00361        77 -----GLLLLSLLLLVAFLVKSPQFPFHFWLPDAHEG  108 (270)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -----89999999999999999486247557788579


No 27 
>PRK12662 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=74.78  E-value=5.9  Score=18.77  Aligned_cols=102  Identities=22%  Similarity=0.170  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             89999999999999999875124432101233443101367876689999999982378989999985100002211112
Q gi|254780860|r  117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP  196 (348)
Q Consensus       117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~  196 (348)
                      ++.+.=+++++.|.++.-   .+++-+.-++.+.......-...+.+.+....-.+||+|+.++.+...+...+.     
T Consensus       135 ~fvf~E~~~i~sy~LI~~---~~~~~~~~aa~ky~i~~~~gs~~~L~gi~~ly~~~Gt~~~~~~~~~~~~~~~~~-----  206 (491)
T PRK12662        135 IYVFLEISSISSYVLVAM---GKDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNR-----  206 (491)
T ss_pred             HHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCH-----
T ss_conf             999999999999999997---798899999999999999999999999999999966654999999977455443-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH
Q ss_conf             4466699999989999999976875430100--3576088
Q gi|254780860|r  197 SMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE  234 (348)
Q Consensus       197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE  234 (348)
                              ....+....++....++.-.||.  .|+|++|
T Consensus       207 --------~~~~~~~~~~~gf~~K~~~~PfH~WlPda~~~  238 (491)
T PRK12662        207 --------AIQIGTLFIMVGLFIKAALFPFHKWLIQAYSE  238 (491)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
T ss_conf             --------99999999999999998071134560577777


No 28 
>PRK12648 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=64.49  E-value=9.8  Score=17.42  Aligned_cols=91  Identities=13%  Similarity=0.083  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             99999999999999998751244321012334431013678766899999999823789899999851000022111124
Q gi|254780860|r  118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPS  197 (348)
Q Consensus       118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~  197 (348)
                      =-.++-++++..+.+..+.+-+++.+..|+.=-+.-..-+...+.++.-.+.-.+||-++.+.-.               
T Consensus       296 KrlLAYSTVSqlG~i~~~iGlgt~~a~~aal~hli~Hal~Ka~LFl~aG~I~~~tGtrdl~~LgG---------------  360 (950)
T PRK12648        296 KGLLAYSTISHLGLITLLLGLGSPLAAVAAIFHIINHATFKASLFMAAGIIDHETGTRDMRRLSG---------------  360 (950)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC---------------
T ss_conf             99999999999999999997366889999999999999999999999869999808700987199---------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             466699999989999999976875430100
Q gi|254780860|r  198 MLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       198 ~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                          ..-.+|.-+.++.++.++..+-+||.
T Consensus       361 ----L~r~mP~ta~~~~iaalSmaGiPp~~  386 (950)
T PRK12648        361 ----LRRLMPITATLAMVAAAAMAGVPLLN  386 (950)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             ----14212899999999999984255203


No 29 
>PRK12663 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=63.01  E-value=10  Score=17.26  Aligned_cols=94  Identities=16%  Similarity=0.127  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             99999999999999998751244321012334431013678766899999999823789899999851000022111124
Q gi|254780860|r  118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPS  197 (348)
Q Consensus       118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~  197 (348)
                      +.+.=+++++.|.++.. |.  ++-+.-++.|-......-...+...+....-.+||+|+.++.....+.....      
T Consensus       133 fvf~E~~~i~sy~Li~~-~~--~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~tGt~~~~~i~~~~~~~~~~~------  203 (497)
T PRK12663        133 YVWFEVMLLASFVLITL-GQ--SREQLRGAIKYVVLNLIGSWLFLLGIGLLYKVFGTLNMAHIAMRLNEMGDNA------  203 (497)
T ss_pred             HHHHHHHHHHHHHHHHH-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH------
T ss_conf             99999999999999996-89--8899999999999999999999999999999848976999999987446637------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             466699999989999999976875430100
Q gi|254780860|r  198 MLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       198 ~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                             .....+.+++++...+..-.||.
T Consensus       204 -------~~~~~~~l~l~gf~~K~~~~Pfh  226 (497)
T PRK12663        204 -------TLTTIALLFLLAFSMKAALFPFM  226 (497)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             -------99999999999999986630102


No 30 
>PRK12644 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=62.09  E-value=11  Score=17.16  Aligned_cols=93  Identities=16%  Similarity=0.155  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             78999999999999999987512443210123344310136787668999999998237898999998510000221111
Q gi|254780860|r  116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP  195 (348)
Q Consensus       116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~  195 (348)
                      |+=-.++-++++..+.+..+.+-+++++..|+.=-+.--.-+...+.++.-.+.-.+||-|+.+.-.             
T Consensus       290 DlKrlLAYSTVSqLG~i~l~lGlgt~~a~~aa~~hll~HAlfKa~LFm~aG~i~h~tGtrdi~~LgG-------------  356 (968)
T PRK12644        290 DLKLILAYGTVSQLGFLTVVVGLGTRDAALAGLAMLVAHALFKATLFLVVGIIDHQTGTRDIRKLSG-------------  356 (968)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC-------------
T ss_conf             4899999988999999999986267999999999999999999999985638678708754888389-------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             24466699999989999999976875430100
Q gi|254780860|r  196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                            ..-.+|.-+.++.++.++..+-+||.
T Consensus       357 ------L~r~mP~Ta~~~~iaalSmaGvPp~~  382 (968)
T PRK12644        357 ------LGRRSPPLAVVAALAAASMAGLPPLL  382 (968)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             ------55303999999999999985165102


No 31 
>PRK02504 NAD(P)H-quinone oxidoreductase subunit 2; Provisional
Probab=60.93  E-value=11  Score=17.03  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             89999999999999999875124432101233443101367876689999999-98237898999998510000221111
Q gi|254780860|r  117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV-LCAGSLNLTDIVYSQKSGLGTFLGFP  195 (348)
Q Consensus       117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~-l~~gs~~~~~iv~~q~~~~~~~~~~~  195 (348)
                      ++...=+.+++.|  .+.|+..+++.+.-++.+.......-...+...+..+. .-.|+.++.++.+...+...      
T Consensus       136 lfv~~El~sl~sY--~Li~~~~~~~~s~eAalKYfllg~~~s~~lL~Gi~llYg~t~g~~~l~~i~~~~~~~~~------  207 (514)
T PRK02504        136 IFISLETLSIASY--LLSGYMKRDPRSSEAALKYLLIGAASAAIFLYGSSLLYGLSGGSTQLDAIALALITSPS------  207 (514)
T ss_pred             HHHHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC------
T ss_conf             9999999999999--99887549978999999999998888999999999999997076889999998755862------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             24466699999989999999976875430100
Q gi|254780860|r  196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                              .....+.+..++...-+..-.||.
T Consensus       208 --------~~~~~~l~lil~G~~fK~a~~PfH  231 (514)
T PRK02504        208 --------LLLALALVFVLAGIAFKIAAVPFH  231 (514)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             --------899999999999999997416654


No 32 
>PRK08375 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=60.89  E-value=11  Score=17.03  Aligned_cols=102  Identities=17%  Similarity=0.118  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             99999999999999998751244321012334431013678766899999999823789899999851000022111124
Q gi|254780860|r  118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPS  197 (348)
Q Consensus       118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~  197 (348)
                      +...-+++++.+.+  .++..++|-+.-++.|.......-...+...+......+||+|+.++.+...+....       
T Consensus       132 ~v~~E~~~i~s~~L--i~~~~~~~~~~~aa~ky~i~~~~g~~~ll~gi~lly~~~Gt~~~~~l~~~~~~~~~~-------  202 (481)
T PRK08375        132 FVFLEISSLSSYAL--VALGGKEGRAGAAAYKYLILGTIGSTFLLAGVGLLYGVTGTLNMADLAGRLPPVGAS-------  202 (481)
T ss_pred             HHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-------
T ss_conf             99999999999999--996199789999999999999999999999999999880884199999987507664-------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH
Q ss_conf             466699999989999999976875430100--3576088
Q gi|254780860|r  198 MLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE  234 (348)
Q Consensus       198 ~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE  234 (348)
                            .....++...+++...++.-.||.  .|++++|
T Consensus       203 ------~~~~~~~~ll~~g~~~K~~~~PfH~WLPda~~~  235 (481)
T PRK08375        203 ------RTVVAAFGFLVLGLALKAALFPLHTWLPDAYAA  235 (481)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
T ss_conf             ------799999999999999997252232231564446


No 33 
>PRK12668 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=57.06  E-value=13  Score=16.63  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             99999999999999987512443210123344310136787668999999998237898999998510000221111244
Q gi|254780860|r  119 YILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSM  198 (348)
Q Consensus       119 ~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~  198 (348)
                      -.++-++++..+.++.|.+.+++.+.-|+.=-+.-..-|...+.++.-++...+|+-|+.+.-.                
T Consensus       266 RlLAYStvsQlGym~~giGigt~la~~ga~~H~~nHa~~KalLFm~aGaV~~~tgt~~i~~lgG----------------  329 (569)
T PRK12668        266 RLLSYHIVSQVGYMVAGVGIGTALAINGAVAHAFNHILYKGLLFMSAGAVLYRTGTEKLTELGG----------------  329 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHCC----------------
T ss_conf             9999989989999999997351989999999999999999999998769989818703899499----------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf             666999999899999999768754301003576088889
Q gi|254780860|r  199 LDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVA  237 (348)
Q Consensus       199 ~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~  237 (348)
                         ..-.+|.-+.++.++.++-.+-+||.==-++.++.+
T Consensus       330 ---L~k~MP~t~~~~~igalsi~GvPpfsGF~SK~mI~~  365 (569)
T PRK12668        330 ---LYKSMPLTTVFCIVGALSISAFPLFSGFVSKSMIIS  365 (569)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             ---332218999999999999872623049999999999


No 34 
>KOG1277 consensus
Probab=53.71  E-value=9.1  Score=17.64  Aligned_cols=88  Identities=22%  Similarity=0.217  Sum_probs=44.6

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99875124432101233443101367876689999999982378---989999985100002211112446669999998
Q gi|254780860|r  132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSL---NLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFP  208 (348)
Q Consensus       132 ~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~---~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~  208 (348)
                      -..|+.|+|-|+.+|+-|=+-|++---      -+.+....++.   |...|. ++.+.-..+........+|.....|.
T Consensus       341 ~i~GY~~gs~Y~r~gG~~Wik~m~lta------~Lfp~~~~~t~~~~N~vai~-y~at~AlPfgt~v~v~~iw~fv~~PL  413 (593)
T KOG1277         341 PINGYVSGSFYARLGGRRWIKNMLLTA------SLFPVPVFGTAFLLNTVAIA-YGATAALPFGTIVVVLLIWLFVISPL  413 (593)
T ss_pred             CCCCEECCCHHHHHCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHCHH
T ss_conf             645301332111324477999998874------13227899999999999998-24121267500699999999985649


Q ss_pred             HHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999997687543010035
Q gi|254780860|r  209 MFVVFFISLLAETNRPPFDLS  229 (348)
Q Consensus       209 ~~~~f~i~~lae~~R~PFD~~  229 (348)
                      .   .+=......+..|||.|
T Consensus       414 ~---~~G~i~GkN~~~~~~~P  431 (593)
T KOG1277         414 T---VLGGIAGKNRSGEFDAP  431 (593)
T ss_pred             H---HCCCCCCCCCCCCCCCC
T ss_conf             7---70530155556778987


No 35 
>PRK12650 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=51.62  E-value=16  Score=16.09  Aligned_cols=93  Identities=16%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             78999999999999999987512443210123344310136787668999999998237898999998510000221111
Q gi|254780860|r  116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP  195 (348)
Q Consensus       116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~  195 (348)
                      |+=-.++-++++..+.+..+.+-+++++..|+.=-+.-..-|.-.+.++.-.+.-.+||-++.+.-.             
T Consensus       295 DlKrlLAYSTVSqLG~i~l~lGlgt~~a~~aal~hlv~HAlfKa~LFm~aG~I~h~tGtrdi~~LgG-------------  361 (969)
T PRK12650        295 DLKKLTAYSTVSQLGWIVATIGVGTPFALTAAIVHTLAHALFKSSLFMLVGVIDHQTGTRDIRRLGS-------------  361 (969)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC-------------
T ss_conf             5899999998999999999985786779999999999999999999998608899826416988578-------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             24466699999989999999976875430100
Q gi|254780860|r  196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                            ..-.+|.-+.++.++.++..+-+||.
T Consensus       362 ------L~r~mP~t~~~~~iaalSmaGvPp~~  387 (969)
T PRK12650        362 ------LWRQMPFTFVSVVIAALSMAAVPPTF  387 (969)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             ------66536999999999999982776211


No 36 
>PRK07363 NAD(P)H-quinone oxidoreductase subunit M; Validated
Probab=51.46  E-value=16  Score=16.08  Aligned_cols=98  Identities=11%  Similarity=0.137  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             99999999999999875124432101233443101367876689999999982378989999985100002211112446
Q gi|254780860|r  120 ILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSML  199 (348)
Q Consensus       120 ~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~  199 (348)
                      +.-+++++.|.++ +-|++.+  +...+.|.......-...+...++.....+|+.|.......+++....         
T Consensus       135 f~E~~~i~sy~LI-~~~g~~~--~~~Aa~ky~i~~~~g~~~~L~~~~~l~~~~g~~~~~~~~~~~~~~~~~---------  202 (499)
T PRK07363        135 FYELELIPFYLLI-AIWGGEK--RGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAVSTQNLSLN---------  202 (499)
T ss_pred             HHHHHHHHHHHHH-HCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH---------
T ss_conf             9999999999988-3689868--999999999999888999999999999996761678999997316423---------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHH
Q ss_conf             669999998999999997687543010--03576088
Q gi|254780860|r  200 DWYWLALFPMFVVFFISLLAETNRPPF--DLSEAESE  234 (348)
Q Consensus       200 ~~~~~~~~~~~~~f~i~~lae~~R~PF--D~~EaEsE  234 (348)
                           .....+..++++...+..-.||  -+|+|++|
T Consensus       203 -----~~~~~~~l~l~gf~vK~~~~P~H~WLPdA~~~  234 (499)
T PRK07363        203 -----TQLILLTLLLLGFGIKIPLVPLHTWLPDAYTE  234 (499)
T ss_pred             -----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf             -----89999999999999862616443044034145


No 37 
>PRK12647 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=50.76  E-value=17  Score=16.01  Aligned_cols=93  Identities=17%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             78999999999999999987512443210123344310136787668999999998237898999998510000221111
Q gi|254780860|r  116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP  195 (348)
Q Consensus       116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~  195 (348)
                      |+=-.++-++++..+.++.|.+.+++.+..|+.=-+.-..-+...+.++.-.+.-.+||-++.+.--             
T Consensus       282 DlKrlLAYSTVSqlG~i~l~lGlgt~~a~~aal~hl~~HalfKa~LFl~aG~i~~~tgtrdi~~LgG-------------  348 (761)
T PRK12647        282 DLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGG-------------  348 (761)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC-------------
T ss_conf             2889999999999999999987677899999999999999999999999999999948960777578-------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             24466699999989999999976875430100
Q gi|254780860|r  196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                            ..-.+|.-+.++.++.++-.+-+||.
T Consensus       349 ------L~r~mP~T~~~~~iaalsmaGlPp~~  374 (761)
T PRK12647        349 ------LRRAMPITAAAALLAALSMAGLPPLF  374 (761)
T ss_pred             ------HHHHCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             ------56306599999999999981785201


No 38 
>PRK12665 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=50.50  E-value=17  Score=15.99  Aligned_cols=100  Identities=12%  Similarity=0.175  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             78999999999999999987512443210123344310136787668999999998237898999998510000221111
Q gi|254780860|r  116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP  195 (348)
Q Consensus       116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~  195 (348)
                      .++.+.-+++++.|.++..+   +++-+.-++.|.......-...+.+.+..+.-.+||+|+.++.....+....     
T Consensus       135 nlfVf~Ev~~i~sy~Li~~~---~~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~tGtln~~~l~~~~~~~~~~-----  206 (524)
T PRK12665        135 NLYVGFEVLLVASYVLLTLG---ATAARIRAGVTYVMVSMVSSLLFLIGIAMVYAATGTLNMADLAVRLDDLPEG-----  206 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH-----
T ss_conf             99999999999999999957---9889999999999999999999999999999980887799999987408813-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCC
Q ss_conf             24466699999989999999976875430100--35760
Q gi|254780860|r  196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAE  232 (348)
Q Consensus       196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaE  232 (348)
                               .....+.+++++...+..-.||.  +|++.
T Consensus       207 ---------~~~~~~~lll~~f~~Kaa~fPlH~WLP~ay  236 (524)
T PRK12665        207 ---------TRMALFAVLLVAFGIKAAVFPLSFWLPDSY  236 (524)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             ---------899999999999999982712097875164


No 39 
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=49.40  E-value=18  Score=15.88  Aligned_cols=48  Identities=31%  Similarity=0.368  Sum_probs=30.2

Q ss_pred             HCCCCCCCCCHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             30100357608888987-5430232011588999999999999999732365543
Q gi|254780860|r  223 RPPFDLSEAESELVAGY-MVEYSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLP  276 (348)
Q Consensus       223 R~PFD~~EaEsELv~G~-~tEYsG~~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~  276 (348)
                      +-=.|.-|||.++-... ...+.++.+..++.+      +.+..+..+|-|+|..
T Consensus       101 ~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g------~~~~~f~~l~gG~w~d  149 (250)
T COG2966         101 HGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAG------LAAAAFALLFGGGWLD  149 (250)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH------HHHHHHHHHCCCCHHH
T ss_conf             288779999999987650865566689999999------9999999990895388


No 40 
>PRK06458 hydrogenase 4 subunit F; Validated
Probab=45.72  E-value=20  Score=15.53  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCC--CCCCCHH
Q ss_conf             89999999976875430100--3576088
Q gi|254780860|r  208 PMFVVFFISLLAETNRPPFD--LSEAESE  234 (348)
Q Consensus       208 ~~~~~f~i~~lae~~R~PFD--~~EaEsE  234 (348)
                      .++...+++...+..-.||.  .|++++|
T Consensus       215 l~~~l~l~g~~~K~a~~PfH~WlPday~~  243 (491)
T PRK06458        215 LAFVFLLIGFGTKVGLFPMHAWLPDAHSE  243 (491)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             99999999999885625266885057560


No 41 
>pfam10125 NADHdeh_related NADH dehydrogenase I, subunit N related protein. This family comprises a set of NADH dehydrogenase I, subunit N related proteins found in archaea. Their exact function, has not, as yet, been determined.
Probab=45.51  E-value=20  Score=15.51  Aligned_cols=132  Identities=17%  Similarity=0.296  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98589899999986653187855235640505789999999999999999875124432101233443101367876689
Q gi|254780860|r   84 FLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGL  163 (348)
Q Consensus        84 f~~~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l  163 (348)
                      .++--.++++|.++..-..--+.   .  +|  .-.+.++.+++.++++ +  +-++.+.+=.+..--...+--..|+.=
T Consensus        68 ~k~rrfmaivCGiAtagam~TgD---l--Fn--FtLFlaliGI~NIGIV-s--aVk~~~VLnaAf~YGliamiaslPLFG  137 (219)
T pfam10125        68 LRIRRFMAIVCGLATAGAMVTGD---L--FN--FTLFLALIGISNIGIV-S--AVKNEWVLNAAFNYGLIAMIATLPLFG  137 (219)
T ss_pred             HHHHHHHHHHHHHHHHCCEEECC---H--HH--HHHHHHHHCCCHHHHH-H--HHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999998886513000130---6--77--9999999761122102-1--041789998787553899986464331


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999998237898999998510000221111244666999999899999999768754301003576088889875430
Q gi|254780860|r  164 VIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEY  243 (348)
Q Consensus       164 ~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEY  243 (348)
                      ..-.+.--+||+|+.|....+.+                  ....+...+.+.+..|++-.||-.+.||       ++.-
T Consensus       138 gAaliLa~tGTLSi~EL~~~~~~------------------~l~~~k~l~~~Gv~GE~GvAPFYaaKAE-------mfRa  192 (219)
T pfam10125       138 GAALILAKTGTLSIWELSKMAGD------------------VLLYAKILLAAGVIGETGVAPFYAAKAE-------MFRA  192 (219)
T ss_pred             HHHHHHHCCCCEEHHHHHCCCCC------------------HHHHHHHHHHHHHCCCCCCCHHHHHHHH-------HHCC
T ss_conf             57877654674049988528842------------------3899999999775054675515776788-------8538


Q ss_pred             CCCCHHH
Q ss_conf             2320115
Q gi|254780860|r  244 SSTPYLL  250 (348)
Q Consensus       244 sG~~~~l  250 (348)
                      .|..+.+
T Consensus       193 pGaPyil  199 (219)
T pfam10125       193 PGAPYIL  199 (219)
T ss_pred             CCCCEEE
T ss_conf             9996786


No 42 
>PRK12664 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=44.86  E-value=21  Score=15.45  Aligned_cols=93  Identities=15%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH
Q ss_conf             7899999999999999998751---2443210123344310136787668999999998237898999998510000221
Q gi|254780860|r  116 GILYILAISSLEIYGIIIGGWA---SNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL  192 (348)
Q Consensus       116 ~ll~~~~l~sl~~~~i~l~G~~---S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~  192 (348)
                      |+==+++-++++..|.++.|.+   .++..+.-|+.=-+.-.+-|...+.++.-++...+|+-|+.+.-.          
T Consensus       225 DiKRlLAYSsVsQiGymv~giG~~~ig~~~a~~~ai~H~~~H~l~KalLFm~aGaV~~~TGt~~i~~LGG----------  294 (530)
T PRK12664        225 NIRRLLCYNVVGQMGLLITAIGFSYSSSVSVIGIIILQIVLSVVYQTLLFMVADSVINRTRKFNLNEVGG----------  294 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC----------
T ss_conf             4999999999989999999986511221768999999999999999999999879999808711788558----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             11124466699999989999999976875430100
Q gi|254780860|r  193 GFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                               ..-.+|.-+.++.++.++-.+-+||.
T Consensus       295 ---------L~k~MP~Ta~~~lIgalSiaG~Pp~s  320 (530)
T PRK12664        295 ---------LFKKMSVEAICSIIAILNMGAFPGTA  320 (530)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             ---------98761199999999999984688522


No 43 
>pfam11436 DUF3199 Protein of unknown function (DUF3199). Some members in this family of proteins with unknown function are annotated as YqbG however this cannot be confirmed. Currently the proteins has no known function.
Probab=44.54  E-value=12  Score=16.90  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=27.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCC---------CHHHHHHHHHHHHH
Q ss_conf             01003576088889875430232---------01158899999999
Q gi|254780860|r  224 PPFDLSEAESELVAGYMVEYSST---------PYLLFMLAEYSTIV  260 (348)
Q Consensus       224 ~PFD~~EaEsELv~G~~tEYsG~---------~~~l~~l~ey~~~~  260 (348)
                      .-+||.|||.|+..=.+..++..         ++|+..+|+|..+.
T Consensus        25 L~~DIlEAe~~i~~i~g~~F~d~~~~plPE~vklAl~klAQy~Al~   70 (124)
T pfam11436        25 LTQDILEAEADIIQITGHDFSDEKYRPLPETVRLALLKLAQYYALK   70 (124)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8989999999999875787112004779489999999999999996


No 44 
>PRK08667 hydrogenase membrane subunit; Validated
Probab=44.20  E-value=21  Score=15.39  Aligned_cols=105  Identities=18%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             89999999999999999875124432101233443101367876689999999982378989999985100002211112
Q gi|254780860|r  117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP  196 (348)
Q Consensus       117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~  196 (348)
                      ++...=+++++.+.++.  +..+++.+.-++.+.....---...+.+.+......+||+|+........           
T Consensus       136 ~~vfwE~m~l~sy~LI~--~~~~~~~~~~Aa~ky~i~~~~G~~~ll~g~~~l~~~~Gs~~~~~~~~~~~-----------  202 (644)
T PRK08667        136 FLVFWEIMALSSFFLVM--NDYQEEETQRAGFFYFVMTQLSTVFLMLGIILLFIQTGSFELSPLGAPSG-----------  202 (644)
T ss_pred             HHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------
T ss_conf             99999999999999984--00998999999999999999999999999999999976188999886421-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH
Q ss_conf             4466699999989999999976875430100--3576088-------88987543
Q gi|254780860|r  197 SMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE  242 (348)
Q Consensus       197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE  242 (348)
                              .....++..++....+..-.||.  +|+|++|       +.+|..+.
T Consensus       203 --------~~~l~~~llliGf~~Kag~~P~H~WLP~A~~~APtpVSALlsgvmvk  249 (644)
T PRK08667        203 --------SLPLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSPVSALMSGVMLK  249 (644)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             --------48999999999999988050269760666678980899999999999


No 45 
>pfam01741 MscL Large-conductance mechanosensitive channel, MscL.
Probab=43.73  E-value=22  Score=15.35  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCC
Q ss_conf             989999999976875430100
Q gi|254780860|r  207 FPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       207 ~~~~~~f~i~~lae~~R~PFD  227 (348)
                      ..++++|++....+.-|..-+
T Consensus        82 Iia~vvFl~Vk~~nk~~~k~~  102 (127)
T pfam01741        82 IIAFAIFLVIKAINKLRKKEE  102 (127)
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999999872367


No 46 
>PRK06591 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=42.81  E-value=23  Score=15.26  Aligned_cols=104  Identities=21%  Similarity=0.225  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf             57899999999999999998751244321012334431013678766899999999823789899999851000022111
Q gi|254780860|r  115 VGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGF  194 (348)
Q Consensus       115 ~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~  194 (348)
                      .++..+.=+++++.|.++..   .++|-+.-++.+......--..-+.+.+..+...+||+|+.++.+...+....    
T Consensus       139 f~lfVf~Ei~~i~sy~Li~~---~~~~~~~~aa~kY~i~~~~gs~~~L~gi~~ly~~tGtl~~~~i~~~~~~~~~~----  211 (433)
T PRK06591        139 FNLYVFIEISALSSYVLIAS---GNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSLNMTDIAAYLQEHTNS----  211 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC----
T ss_conf             99999999999999999980---99889999999999999999999999999999997685699999987636675----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHH
Q ss_conf             1244666999999899999999768754301003--576088
Q gi|254780860|r  195 PPSMLDWYWLALFPMFVVFFISLLAETNRPPFDL--SEAESE  234 (348)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~--~EaEsE  234 (348)
                               -....+...+++....+..-.||..  |+|.+|
T Consensus       212 ---------~~~~~~~~l~~ig~~~K~a~fPlH~WLPday~~  244 (433)
T PRK06591        212 ---------RIITIAIGFFLIGAILKTAFFPMHFWMMRAYNN  244 (433)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             ---------289999999999999997264361603663478


No 47 
>MTH00014 ND4 NADH dehydrogenase subunit 4; Validated
Probab=40.88  E-value=24  Score=15.08  Aligned_cols=114  Identities=14%  Similarity=0.216  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH
Q ss_conf             78999999999999999987512443210123344310136787668999999998237898999998510000221111
Q gi|254780860|r  116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP  195 (348)
Q Consensus       116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~  195 (348)
                      -.+++..=.+.-+...+.++|+.+.. ..-++.+-..-...-..++...+......+||.|.......+....       
T Consensus       111 ~~fyif~E~~lip~~~LI~~~g~~~~-r~~A~~~~~iyt~~gsl~lL~~i~~ly~~~gs~~~~~~~~~~~~~~-------  182 (451)
T MTH00014        111 LMFYIFFEASLIPTLFLILGWGYQPE-RLQAGFYLMIYTVTASLPLLMSILLIFYTNNSLNMFMSNTYTPPSI-------  182 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCH-------
T ss_conf             99999999999999999996089799-9999999999999999999999999998649699999998663445-------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHH-------HHHHHHHHHCC
Q ss_conf             2446669999998999999997687543010--03576088-------88987543023
Q gi|254780860|r  196 PSMLDWYWLALFPMFVVFFISLLAETNRPPF--DLSEAESE-------LVAGYMVEYSS  245 (348)
Q Consensus       196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PF--D~~EaEsE-------Lv~G~~tEYsG  245 (348)
                              .......+..+++...+..-.||  -+|+|+.|       +-+|..+--++
T Consensus       183 --------~~~~~~~~~~~~aF~vK~p~~P~H~WLP~Ah~eAP~~~S~lLagvllK~G~  233 (451)
T MTH00014        183 --------YSMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGG  233 (451)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             --------899999999999999970687201013431075977999999999999999


No 48 
>PRK07691 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=39.32  E-value=26  Score=14.93  Aligned_cols=104  Identities=10%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             89999999999999999875124432101233443101367876689999999982378989999985100002211112
Q gi|254780860|r  117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP  196 (348)
Q Consensus       117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~  196 (348)
                      ++.+.-+++++.|.++.- |  +++.+.-++.|......--...+.+.+....-.+||+|+.++.+.-.+.....     
T Consensus       134 lfvf~Ei~~i~sy~Li~~-~--~~~~~~~aa~ky~i~~~~gs~~~L~gi~~ly~~tGtl~~~~~~~~~~~~~~~~-----  205 (498)
T PRK07691        134 LFVFFEVMLMASYVLLVI-G--GTKIQLRETIKYVLINVVSSSFFVVGVAILYSVVGTLNMADISVKIAELGAHQ-----  205 (498)
T ss_pred             HHHHHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC-----
T ss_conf             999999999999999998-4--97799999999999999999999999999999977876999999997535554-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH
Q ss_conf             4466699999989999999976875430100--3576088
Q gi|254780860|r  197 SMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE  234 (348)
Q Consensus       197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE  234 (348)
                            .-.....+..++++...+..-.||.  .|++++|
T Consensus       206 ------~~~~~~~~~l~~~~f~~K~a~~PfH~WlPday~~  239 (498)
T PRK07691        206 ------TGLINVVAILFLFVFALKAGLFPLYFWLPGSYYA  239 (498)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC
T ss_conf             ------2799999999999999985625460115444568


No 49 
>PRK05846 NADH dehydrogenase subunit M; Reviewed
Probab=37.62  E-value=27  Score=14.77  Aligned_cols=92  Identities=14%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHCCHHH
Q ss_conf             8999999999999999987512443210123344310136787668999999998-----23789899999851000022
Q gi|254780860|r  117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC-----AGSLNLTDIVYSQKSGLGTF  191 (348)
Q Consensus       117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~-----~gs~~~~~iv~~q~~~~~~~  191 (348)
                      ++...-+.+++.|.++- -|+.+  -+.-++.|.......-...+...+..+...     .+|+|..++.+.+.+.    
T Consensus       136 ~fvf~El~~i~sy~Li~-~~~~~--~~~~Aa~ky~i~~~~gs~~~L~gi~~l~~~~~~~~~gs~~~~~l~~~~~~~----  208 (495)
T PRK05846        136 FYVFFEAMLIPMYFLIG-VWGGK--NRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNAGVGTFDIADLLNTPLPA----  208 (495)
T ss_pred             HHHHHHHHHHHHHHHHH-HCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH----
T ss_conf             99999999999999999-75977--999999999999999999999999999999963454013899998555772----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             111124466699999989999999976875430100
Q gi|254780860|r  192 LGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                                  -.....++.+++....+..-.||.
T Consensus       209 ------------~~~~~~~~~~~~g~~~K~a~~PfH  232 (495)
T PRK05846        209 ------------GVQYLLFLAFFIAFAVKMPMFPLH  232 (495)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             ------------589999999999999986224233


No 50 
>MTH00062 ND4 NADH dehydrogenase subunit 4; Provisional
Probab=37.19  E-value=28  Score=14.73  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             50578999999999999999987512443210123344310136787668999999998237898999
Q gi|254780860|r  113 INVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDI  180 (348)
Q Consensus       113 ~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~i  180 (348)
                      .|.-+++++.=.++-+...++.||+.+..= .-.+.--..-...-..|+.+.++......||++....
T Consensus        93 ~nll~FYifFE~sLIP~~~lI~~wG~q~eR-~~A~~y~l~YTl~~SlplL~~il~l~~~~gs~~~~~~  159 (419)
T MTH00062         93 NNSLLFWFFYELSIIPLLYLLFSESPYSER-YLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSEW  159 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             799999999999999999999880894899-9999999999999999999999999986587309977


No 51 
>PRK12646 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=36.87  E-value=28  Score=14.70  Aligned_cols=94  Identities=20%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             578999999999999999987512443210--------------123344310136787668999999998237898999
Q gi|254780860|r  115 VGILYILAISSLEIYGIIIGGWASNSKYAF--------------LGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDI  180 (348)
Q Consensus       115 ~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~--------------iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~i  180 (348)
                      .|+=-.++-++++..+.++.+.+-+++++.              .|+.=-+.-..-|...+.++.-.+.-.+||-|+.+.
T Consensus       296 ~DlKrlLAYSTvSqlG~i~l~iGlG~~~a~~~~~~l~~~~~~~l~aal~hl~~HalfKa~LFm~aG~I~~~tGtrdi~~L  375 (800)
T PRK12646        296 WDLKGILAYSTISQLGMIMAMVGIGGGYAQHQQDAIASIYVFVLFGALFHLMNHAIFKCALFMGVGILDHEAGSRDIRIL  375 (800)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             44899999999999999999997573322023210235677799999999999999999999999999997187518784


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99851000022111124466699999989999999976875430100
Q gi|254780860|r  181 VYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       181 v~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                      -                   -..-.+|.-+.++.++.++..+-+||.
T Consensus       376 g-------------------GL~r~MP~ta~~~~iaalSmaGlPP~~  403 (800)
T PRK12646        376 S-------------------GMRQLFPKMNLVMTIAALSMAGVPFLN  403 (800)
T ss_pred             C-------------------CHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8-------------------966423899999999999981785200


No 52 
>KOG2232 consensus
Probab=35.76  E-value=17  Score=16.07  Aligned_cols=28  Identities=32%  Similarity=0.330  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHCCCCCC-------------CCCHHHHHHHH
Q ss_conf             99999999997278998-------------57445318889
Q gi|254780860|r   35 LMDRKVWAAVQLRRGPN-------------VVGPWGLLQSF   62 (348)
Q Consensus        35 ~~eRKi~A~iQ~R~GP~-------------~vg~~GilQp~   62 (348)
                      ++.||+.-|+|.|+|--             +.||.|.||..
T Consensus        95 ~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPgGylqy~  135 (734)
T KOG2232          95 GLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPGGYLQYV  135 (734)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEE
T ss_conf             55799999998764342003644675210367886415552


No 53 
>TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase; InterPro: IPR010249   This entry represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the 'dark' protochlorophyllide reductase enzymes BchN, BchB and BchL . This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.; GO: 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process.
Probab=33.99  E-value=21  Score=15.43  Aligned_cols=13  Identities=46%  Similarity=0.838  Sum_probs=8.2

Q ss_pred             CCCCCCCCHHHHHHHHHH
Q ss_conf             789985744531888999
Q gi|254780860|r   47 RRGPNVVGPWGLLQSFAD   64 (348)
Q Consensus        47 R~GP~~vg~~GilQp~~D   64 (348)
                      |+|||     .|+|.+.-
T Consensus         1 RIGPN-----sIiQ~v~a   13 (189)
T TIGR02019         1 RIGPN-----SIIQTVAA   13 (189)
T ss_pred             CCCCH-----HHHHHHHH
T ss_conf             98842-----68999999


No 54 
>PRK06473 NAD(P)H-quinone oxidoreductase subunit D4; Validated
Probab=33.67  E-value=31  Score=14.38  Aligned_cols=109  Identities=13%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             89999999999999999875124432101233443101367876689999999982378989999985100002211112
Q gi|254780860|r  117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP  196 (348)
Q Consensus       117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~  196 (348)
                      +..+.=+++++.|.++ +-|+.  +-+..++.|...-..--...+...+......+|+.|+......+.+...       
T Consensus       132 ~fvf~E~~~i~sy~LI-~~~g~--~~~~~aa~ky~i~~~~gs~~~L~gi~~l~~~~g~~~~~~~~~~~~~~~~-------  201 (500)
T PRK06473        132 FFLFYELELIPLYLLI-AIWGG--QRRGYAATKFLLYTAISGILVLVSFLGLVWLSGASSFDYEPLLSHTLPL-------  201 (500)
T ss_pred             HHHHHHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC-------
T ss_conf             9999999999999999-94387--8889999989999975268999999999999386508899998726752-------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH
Q ss_conf             4466699999989999999976875430100--3576088-------88987543
Q gi|254780860|r  197 SMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE  242 (348)
Q Consensus       197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE  242 (348)
                             -.....+..++++...+..-.||.  .|+|+.|       +.+|..+.
T Consensus       202 -------~~~~~~~~~~l~gf~~K~~~~P~H~WLPdA~~~aPt~vSallsg~l~K  249 (500)
T PRK06473        202 -------ATQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLK  249 (500)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHCCCCCCHHHHHHHHHH
T ss_conf             -------489999999999999862131215031414200898504778899998


No 55 
>MTH00110 ND4 NADH dehydrogenase subunit 4; Provisional
Probab=32.96  E-value=32  Score=14.31  Aligned_cols=125  Identities=14%  Similarity=0.196  Sum_probs=69.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH
Q ss_conf             50578999999999999999987512443210123344310136787668999999998237898999998510000221
Q gi|254780860|r  113 INVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL  192 (348)
Q Consensus       113 ~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~  192 (348)
                      .|.-.+++..=.++-+..++.++|+.+.+= .-.+..-..-...-..|+.++++.....+||.|.......+.+....  
T Consensus       113 ~dl~~FYiffE~~LIP~~~LI~~wG~~~er-~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~--  189 (459)
T MTH00110        113 TELIMFYILFEATLIPTLIIITRWGNQTER-LNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPLPNS--  189 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH--
T ss_conf             489999999999999999999984995799-99999999999999999999999999975986099999887514504--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHHHCCCCHHHHHH
Q ss_conf             11124466699999989999999976875430100--3576088-------8898754302320115889
Q gi|254780860|r  193 GFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVEYSSTPYLLFML  253 (348)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tEYsG~~~~l~~l  253 (348)
                                 ......++.++++...+..--||.  +|+||.|       +-+|....-+|  +++++.
T Consensus       190 -----------~~~~~~~l~~~laF~vK~p~fp~H~WLP~AhveAP~~gSmiLAgvLlKlG~--YGl~R~  246 (459)
T MTH00110        190 -----------WSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG--YGMMRI  246 (459)
T ss_pred             -----------HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf             -----------799999999999999974888886657253250975999999999999989--999999


No 56 
>KOG1275 consensus
Probab=31.80  E-value=20  Score=15.61  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=21.4

Q ss_pred             HHHHHCCC-CCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             87543010-03576088889875430232011
Q gi|254780860|r  219 AETNRPPF-DLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       219 ae~~R~PF-D~~EaEsELv~G~~tEYsG~~~~  249 (348)
                      ++.++.|| |---+-+|=|..|.|+|||..=|
T Consensus       955 Gp~eGiPFiDDYv~T~d~VvDYLTqySGI~PG  986 (1118)
T KOG1275         955 GPNEGIPFIDDYVSTDDKVVDYLTQYSGIKPG  986 (1118)
T ss_pred             CCCCCCCCCCCEECCHHHHHHHHHHHCCCCCC
T ss_conf             77788862032331405888888874487766


No 57 
>KOG2228 consensus
Probab=27.13  E-value=41  Score=13.71  Aligned_cols=46  Identities=13%  Similarity=0.149  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             999999999999997278998574453188899999998630546453540
Q gi|254780860|r   31 AYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNK   81 (348)
Q Consensus        31 ~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~   81 (348)
                      -....+||++.+|.-.|+=|-.     =.||+-|..++..|-..+|.+..+
T Consensus       182 d~lE~LEKRVKSRFshr~I~m~-----~~~~l~~yv~l~r~ll~v~~e~~~  227 (408)
T KOG2228         182 DILELLEKRVKSRFSHRVIFML-----PSLPLGDYVDLYRKLLSVPAEFSD  227 (408)
T ss_pred             CHHHHHHHHHHHHCCCCEEECC-----CCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             3899999998743355246226-----988858899999997357756860


No 58 
>PRK00989 truB tRNA pseudouridine synthase B; Provisional
Probab=26.86  E-value=17  Score=16.07  Aligned_cols=32  Identities=22%  Similarity=0.195  Sum_probs=27.3

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999727899857445318889999999
Q gi|254780860|r   37 DRKVWAAVQLRRGPNVVGPWGLLQSFADFLKF   68 (348)
Q Consensus        37 eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL   68 (348)
                      ..++.++++++.|..|+|-.|-|-|+|.++=.
T Consensus        22 S~~vv~~vkk~l~~kKvGH~GTLDP~AtGvLi   53 (235)
T PRK00989         22 SFSLIRALTKLIGVKKIGHAGTLDPFATGVMV   53 (235)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
T ss_conf             89999999998587746878677974435288


No 59 
>MTH00206 ND4 NADH dehydrogenase subunit 4; Provisional
Probab=25.64  E-value=43  Score=13.54  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             99999999999987512443210123344310136787668999999998237898999998510000221111244666
Q gi|254780860|r  122 AISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDW  201 (348)
Q Consensus       122 ~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~  201 (348)
                      =.++++.+ ...+.|+.+.. ..-.+..-..-...-..++...+....-.+|+.|..++.+...+..             
T Consensus       122 E~~lip~~-~LI~~wg~~~~-r~~A~~~~~i~t~~gs~~lL~~i~~l~~~~gs~~~~~~~~~~~~~~-------------  186 (452)
T MTH00206        122 EATLIPTL-LLITRWGAQKE-RLQAGTYFLFYTLVGSLPLLIALLKLYNSLGSLSMPIILENLSSYS-------------  186 (452)
T ss_pred             HHHHHHHH-HHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------
T ss_conf             99999999-99997099889-9999999999999999999999999998827148999998846668-------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHHHCC
Q ss_conf             99999989999999976875430100--3576088-------88987543023
Q gi|254780860|r  202 YWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVEYSS  245 (348)
Q Consensus       202 ~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tEYsG  245 (348)
                          ....+...+++.+.+..-.||.  .|+|++|       +-+|..+.-++
T Consensus       187 ----~~~~~~~~~l~f~vK~~~~pfH~WLP~Ah~eAP~~~S~iLagvllK~G~  235 (452)
T MTH00206        187 ----DNFWWLACLLAFLVKLPLYGLHLWLPKAHVEAPIAGSMVLAGVLLKLGG  235 (452)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             ----9999999999999998786100106877788980999999999999999


No 60 
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M.  tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required.  E. coli TruB, M.  tuberculosis TruB and S. cerevisiae Pus4,  make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs).  Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=25.49  E-value=17  Score=15.96  Aligned_cols=30  Identities=23%  Similarity=0.181  Sum_probs=26.7

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             999999997278998574453188899999
Q gi|254780860|r   37 DRKVWAAVQLRRGPNVVGPWGLLQSFADFL   66 (348)
Q Consensus        37 eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~   66 (348)
                      ...+.++++++.|..|||-.|-|-|+|.++
T Consensus        13 S~~vv~~vk~~~~~kKvGH~GTLDP~AtGv   42 (210)
T cd00506          13 SHDVVDTIRRIFLAEKVGHGGTLDPFATGV   42 (210)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf             899999999985877357686669745242


No 61 
>KOG1047 consensus
Probab=25.46  E-value=32  Score=14.31  Aligned_cols=41  Identities=17%  Similarity=0.347  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHH-------HHHHH
Q ss_conf             999999999999997278998574--453188899999-------99863
Q gi|254780860|r   31 AYVLLMDRKVWAAVQLRRGPNVVG--PWGLLQSFADFL-------KFVFK   71 (348)
Q Consensus        31 ~f~~~~eRKi~A~iQ~R~GP~~vg--~~GilQp~~D~~-------KL~~K   71 (348)
                      .|.+.+|||+.+|+|.+.=-..-.  -++-+|+-.|..       ||..|
T Consensus       318 GfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~k  367 (613)
T KOG1047         318 GFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVK  367 (613)
T ss_pred             CCHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             30556656665664046688899861865525788853898532136663


No 62 
>pfam08809 DUF1799 Phage related hypothetical protein (DUF1799). Members of this family are about 100 amino acids in length and are uncharacterized.
Probab=24.56  E-value=46  Score=13.42  Aligned_cols=26  Identities=31%  Similarity=0.438  Sum_probs=14.9

Q ss_pred             HHHHCCCCCCCCCHHHH-HHHHHHHHHHH
Q ss_conf             99972789985744531-88899999998
Q gi|254780860|r   42 AAVQLRRGPNVVGPWGL-LQSFADFLKFV   69 (348)
Q Consensus        42 A~iQ~R~GP~~vg~~Gi-lQp~~D~~KL~   69 (348)
                      ..-|.|.||+  |+.|+ +..+.+.+|+.
T Consensus        32 ~~TQWR~g~~--G~~GLDY~~l~~~~~~~   58 (83)
T pfam08809        32 MSTQWRVGPA--GATGLDYSVLFAVLRRY   58 (83)
T ss_pred             HCCCCCCCCC--CCCCCCHHHHHHHHHHC
T ss_conf             7183765689--86403099999999881


No 63 
>pfam05348 UMP1 Proteasome maturation factor UMP1. UMP1 is a short-lived chaperone present in the precursor form of the 20S proteasome and absent in the mature complex. UMP1 is required for the correct assembly and enzymatic activation of the proteasome. UMP1 seems to be degraded by the proteasome upon its formation
Probab=24.48  E-value=41  Score=13.70  Aligned_cols=19  Identities=26%  Similarity=0.268  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHCCCCC
Q ss_conf             9999999999999727899
Q gi|254780860|r   32 YVLLMDRKVWAAVQLRRGP   50 (348)
Q Consensus        32 f~~~~eRKi~A~iQ~R~GP   50 (348)
                      .=-.+|||+..+.|++.|.
T Consensus        65 lr~~ME~ki~~~~~r~P~~   83 (130)
T pfam05348        65 LKMDMEQKIASRVQRPPGL   83 (130)
T ss_pred             HHHHHHHHHHHHCCCCCCC
T ss_conf             8889999999833679988


No 64 
>PRK04099 truB tRNA pseudouridine synthase B; Provisional
Probab=24.10  E-value=20  Score=15.59  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=26.2

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             999999997278998574453188899999
Q gi|254780860|r   37 DRKVWAAVQLRRGPNVVGPWGLLQSFADFL   66 (348)
Q Consensus        37 eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~   66 (348)
                      ..++.+++.++.|-.|+|-.|-|-|+|.++
T Consensus        15 S~~vv~~vkk~l~~kKvGH~GTLDP~AtGv   44 (272)
T PRK04099         15 SNAFLSRLKRKYGVKKAGFSGTLDPFAKGV   44 (272)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf             899999999984998446370569866045


No 65 
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=23.10  E-value=49  Score=13.25  Aligned_cols=20  Identities=20%  Similarity=0.190  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCC
Q ss_conf             98999999997687543010
Q gi|254780860|r  207 FPMFVVFFISLLAETNRPPF  226 (348)
Q Consensus       207 ~~~~~~f~i~~lae~~R~PF  226 (348)
                      ..++.+|++.-..+.-+..-
T Consensus        75 IiA~viF~~Vk~~n~~~~~~   94 (120)
T PRK13954         75 IIAFALFIFVKIANTLMKKE   94 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999987245


No 66 
>PRK09759 small toxic polypeptide; Provisional
Probab=22.71  E-value=49  Score=13.20  Aligned_cols=25  Identities=12%  Similarity=0.292  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999999999972789985
Q gi|254780860|r   28 IFIAYVLLMDRKVWAAVQLRRGPNV   52 (348)
Q Consensus        28 ~~~~f~~~~eRKi~A~iQ~R~GP~~   52 (348)
                      ..+.++||+-|.-+--.|.|.|-+.
T Consensus        15 ~TiL~fTwmvRDSLCEL~~rQg~~E   39 (50)
T PRK09759         15 FTLLFFTWMIRDSLCELHIKQGSYE   39 (50)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             9999999999977878886626645


No 67 
>TIGR01770 NDH_I_N proton-translocating NADH-quinone oxidoreductase, chain N; InterPro: IPR010096   This entry describes the 14th (based on Escherichia coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This entry does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This entry also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=22.68  E-value=50  Score=13.20  Aligned_cols=115  Identities=16%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             89999999999999999875124432101233443101367876689999999982378989999985100002211112
Q gi|254780860|r  117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP  196 (348)
Q Consensus       117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~  196 (348)
                      +...+++.-.+-..=+++|..-+|++|.-||.--.....---.-+..-.-.+.-.+||+|..++.+.+.+...+......
T Consensus       130 l~~y~gLEl~SL~~Y~L~~~~r~s~~S~EAglKYfiLGa~sS~llLfG~sliYg~tG~~~~~~~~~~~~~~~~~~~~i~~  209 (491)
T TIGR01770       130 LSIYLGLELQSLCFYVLAALKRKSEFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNLEKNISNILI  209 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf             99999999999999999863211121235668999999999999999999999867677799999985211023430310


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCHHHH
Q ss_conf             446669999998999999997687543010-----0357608888
Q gi|254780860|r  197 SMLDWYWLALFPMFVVFFISLLAETNRPPF-----DLSEAESELV  236 (348)
Q Consensus       197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PF-----D~~EaEsELv  236 (348)
                      .     .-....+.+...++..=+..-.||     |.=||=.--|
T Consensus       210 ~-----~~~l~~G~~f~~~gl~FKl~avPFH~W~PDVYeGaP~~v  249 (491)
T TIGR01770       210 N-----SSLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTSV  249 (491)
T ss_pred             C-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             4-----889999999999999999986133343786413654999


No 68 
>PRK13419 F0F1 ATP synthase subunit A; Provisional
Probab=22.65  E-value=50  Score=13.19  Aligned_cols=72  Identities=22%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999999727899857445318889999999-863054645354038985898999999866531878552
Q gi|254780860|r   32 YVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKF-VFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADG  107 (348)
Q Consensus        32 f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL-~~Ke~i~p~~~~~~~f~~~P~i~~~~~~~~~~~iP~~~~  107 (348)
                      .+...-||...+ +.+.-|.  |..+.+.++.|.++- ..|+++= ++.++++-.+.-++.++...=.+-.+|++.+
T Consensus       116 ~f~~~~r~ykk~-~~~~~P~--G~~n~~E~lV~FVRddIa~~nIG-~~~~ky~PfL~TlFfFIL~~NLlGLIP~~~t  188 (335)
T PRK13419        116 VFLAAGRKYKKM-TKSQAPK--GLANAMEALVEFIRLDVAKSNIG-HGYEKFLPYLLTVFFFILVCNLLGLVPYGAT  188 (335)
T ss_pred             HHHHHHHHHHHC-CCCCCCH--HHHHHHHHHHHHHHHHHHHHCCC-CCCCEECHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999998614-8455983--88888999999998645784048-6663531799999999999999773587878


No 69 
>CHL00011 ndhD NADH dehydrogenase subunit 4
Probab=22.23  E-value=51  Score=13.14  Aligned_cols=35  Identities=23%  Similarity=0.526  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH
Q ss_conf             89999999976875430100--3576088-------88987543
Q gi|254780860|r  208 PMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE  242 (348)
Q Consensus       208 ~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE  242 (348)
                      ..++.++++...+..-.||.  .|++++|       +-+|..+.
T Consensus       212 ~~~~~~ligf~vK~~~fP~H~WlPda~~~ap~~~s~llsg~~~k  255 (500)
T CHL00011        212 LFYIGFLIAFAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLK  255 (500)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999999852845460116777778983999999999999


No 70 
>PTZ00227 variable surface protein Vir14; Provisional
Probab=22.18  E-value=47  Score=13.31  Aligned_cols=20  Identities=10%  Similarity=-0.074  Sum_probs=7.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHH
Q ss_conf             88987543023201158899
Q gi|254780860|r  235 LVAGYMVEYSSTPYLLFMLA  254 (348)
Q Consensus       235 Lv~G~~tEYsG~~~~l~~l~  254 (348)
                      ..+-..-|=+|..+....++
T Consensus       275 kMEkl~~~np~~nLl~~~~g  294 (418)
T PTZ00227        275 KMEKLEKLNPGGNLLLTDMG  294 (418)
T ss_pred             HHHHHHHHCCCCCEEECCCC
T ss_conf             99998750887772323234


No 71 
>PRK12645 monovalent cation/H+ antiporter subunit A; Reviewed
Probab=21.89  E-value=51  Score=13.10  Aligned_cols=92  Identities=11%  Similarity=0.214  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             99999999999998751244321012334431013678766899999999823789899999851000022111124466
Q gi|254780860|r  121 LAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLD  200 (348)
Q Consensus       121 ~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~  200 (348)
                      .=+++++.|.  +.|+..+.+-+.-++.|.......-...+...+......+||+|+.++.+........      .   
T Consensus       139 wElt~l~Sy~--LI~~~~~~~~~~~aA~k~ll~t~~G~l~lL~gi~ll~~~tGt~~~~~l~~~~~~~~~~------~---  207 (800)
T PRK12645        139 WELTSISSFL--LISYWYEREASRYGAQKSMLITVFGGLSMLGGFILLYIMTGSFSIREMIQHADEIQNS------P---  207 (800)
T ss_pred             HHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC------C---
T ss_conf             9999999999--9830599889999999998777777899999999999997894199999732101357------0---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             699999989999999976875430100
Q gi|254780860|r  201 WYWLALFPMFVVFFISLLAETNRPPFD  227 (348)
Q Consensus       201 ~~~~~~~~~~~~f~i~~lae~~R~PFD  227 (348)
                          ....+.+..++....++...||.
T Consensus       208 ----l~~~a~~LiliGa~~KsA~fPfH  230 (800)
T PRK12645        208 ----LFIPAMILILLGAFTKSAQFPFY  230 (800)
T ss_pred             ----HHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             ----99999999999999983626661


No 72 
>PRK08168 NADH dehydrogenase subunit L; Provisional
Probab=21.60  E-value=52  Score=13.06  Aligned_cols=90  Identities=20%  Similarity=0.153  Sum_probs=60.5

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99875124432101233443101367876689999999982378989999985100002211112446669999998999
Q gi|254780860|r  132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFV  211 (348)
Q Consensus       132 ~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (348)
                      .+.|+-.+.|-+.-.+.|.....---+..+...+......+||.++.++.+........             .....+..
T Consensus       137 ~LI~f~~er~~A~~AA~Kafl~~riGd~~LL~a~~ll~~~~GT~~i~~i~~~~~~~~~~-------------~~l~~a~l  203 (514)
T PRK08168        137 RLLTFYPDRPRARLAAHKKFIASRLAELLLLAAAGLLYLEVGSLSLADILQQVAADGLS-------------LSLQAAAL  203 (514)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC-------------HHHHHHHH
T ss_conf             99832499888999999999999999999999999999996987399999987445676-------------58999999


Q ss_pred             HHHHHHHHHHHHCCC-----CCCCCCHH
Q ss_conf             999997687543010-----03576088
Q gi|254780860|r  212 VFFISLLAETNRPPF-----DLSEAESE  234 (348)
Q Consensus       212 ~f~i~~lae~~R~PF-----D~~EaEsE  234 (348)
                      +..++...++...||     |-.||.+-
T Consensus       204 LL~laA~~KSAQfPfH~WLp~AMeaPTP  231 (514)
T PRK08168        204 LLALAALLKTAQLPLHGWLIQVMEAPTP  231 (514)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf             9999999885117373317988658980


No 73 
>PRK12667 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=21.52  E-value=52  Score=13.05  Aligned_cols=112  Identities=16%  Similarity=0.101  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             99999999999999998751244321012334431013678766899999999823789899999851000022111124
Q gi|254780860|r  118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPS  197 (348)
Q Consensus       118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~  197 (348)
                      +...=+.+++.|.++  |+..+++-+.-++.+......--...+...+....-.+||.|+.++.+...+...........
T Consensus       139 fvf~El~~i~sy~Li--~~~~~~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~~Gs~~~~~l~~~~~~~~~~~~~~~~~  216 (517)
T PRK12667        139 FVMLEVLSISAYGLV--AYYRDRGDAVEAAIKYALIGAVGTTMYFLALVILYGTYGTLNMADLSLKIHGLSGAGETTGVG  216 (517)
T ss_pred             HHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999--882998999999999999999999999999999999977851999999975303456666420


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH
Q ss_conf             466699999989999999976875430100--3576088
Q gi|254780860|r  198 MLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE  234 (348)
Q Consensus       198 ~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE  234 (348)
                      .   .......+...++++...+..-.||.  .|++++|
T Consensus       217 ~---~~~~~~~~~~l~ligf~~K~~l~PfH~WLPday~~  252 (517)
T PRK12667        217 N---VPWASGLALALALWAFTIKAAIFPNHFWLPDAHPA  252 (517)
T ss_pred             C---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf             0---68999999999999999985606324665256323


No 74 
>PRK02546 NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Probab=21.33  E-value=53  Score=13.03  Aligned_cols=108  Identities=13%  Similarity=0.157  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             99999999999998751244321012334431013678766899999999823789899999851000022111124466
Q gi|254780860|r  121 LAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLD  200 (348)
Q Consensus       121 ~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~  200 (348)
                      .-+++++.|.++ +-|++.+  +...+.|-..-...-...+...++......|+.+.......+++...           
T Consensus       147 ~E~~~i~sy~LI-g~~g~~~--~~~Aa~k~~l~t~~gs~~lL~~~~~l~~~~g~~~f~~~~l~~~~~~~-----------  212 (531)
T PRK02546        147 WELELIPVYLLL-AIWGGKK--RQYAATKFILYTAGSSLFILLAALAMAFYGDTPSFDMTHLAAKDFGL-----------  212 (531)
T ss_pred             HHHHHHHHHHHH-HHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH-----------
T ss_conf             999999999999-9809899--99999999999977799999999999998487379999998543562-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHHHCC
Q ss_conf             699999989999999976875430100--3576088-------88987543023
Q gi|254780860|r  201 WYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVEYSS  245 (348)
Q Consensus       201 ~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tEYsG  245 (348)
                         -.....+..++++...+..-.||.  +|+|++|       +-+|..+.-++
T Consensus       213 ---~~~~~~~~~~li~f~vK~~~fP~H~WLPdA~~~aPt~~S~llagvl~K~G~  263 (531)
T PRK02546        213 ---GFQLLCYAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGG  263 (531)
T ss_pred             ---HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             ---799999999999999850103451266888778990678888899998744


No 75 
>TIGR00109 hemH ferrochelatase; InterPro: IPR001015 Synonym(s): Protoheme ferro-lyase, Iron chelatase, etc.   Ferrochelatase catalyzes the last step in heme biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protoheme , . In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane.   The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved , . The human enzyme exists as a homodimer. Each subunit contains one [Fe2S2] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [Fe2S2]cluster and in stabilisation of the homodimer. The [Fe2S2] cluster ligands are Cys196, Cys403, Cys406 and Cys411. The experiments with Co(II) binding show that His230 and Asp383 are part of the enzyme active site .   Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release .; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process.
Probab=20.78  E-value=30  Score=14.52  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=15.6

Q ss_pred             HHC-CCCCCCCCHHHHHHHHHH-HHHHHHHCC
Q ss_conf             972-789985744531888999-999986305
Q gi|254780860|r   44 VQL-RRGPNVVGPWGLLQSFAD-FLKFVFKEP   73 (348)
Q Consensus        44 iQ~-R~GP~~vg~~GilQp~~D-~~KL~~Ke~   73 (348)
                      -|+ |.||..     +|+|..| ++|-+.++.
T Consensus       250 ~QSe~~GP~~-----WL~P~T~e~~~~l~~~~  276 (339)
T TIGR00109       250 YQSERVGPEP-----WLGPYTEELLEKLGEKG  276 (339)
T ss_pred             EECCCCCCCC-----CCCCCHHHHHHHHHHHC
T ss_conf             6216768865-----66632799999986506


No 76 
>PRK08676 hydrogenase membrane subunit; Validated
Probab=20.47  E-value=55  Score=12.92  Aligned_cols=85  Identities=19%  Similarity=0.156  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf             99999999999999875124432101233443101367---876689999999982378989999985100002211112
Q gi|254780860|r  120 ILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISY---EVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP  196 (348)
Q Consensus       120 ~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isy---E~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~  196 (348)
                      .++-+|++..+.++.|.+.+++.+.-|+.   .+++++   -..+.++.-.+.-.+||-++.+.-.              
T Consensus       299 lLAYSSIshmG~i~lg~~~gt~~~~~gal---~~~i~H~l~k~~LFl~aG~i~~~~gt~~i~~l~G--------------  361 (486)
T PRK08676        299 LIAFSSIEHMGLMLLGIGIGTPLALFWAL---FHMLAHSLVKAGLFFSAGILHRQYRSDRFDRIFD--------------  361 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC--------------
T ss_conf             99997999999999999967399999999---9999999999999999999999749976998659--------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             446669999998999999997687543010
Q gi|254780860|r  197 SMLDWYWLALFPMFVVFFISLLAETNRPPF  226 (348)
Q Consensus       197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PF  226 (348)
                           ..-.+|.....+.++.++-.+-+||
T Consensus       362 -----L~~~mP~~a~~~~i~~lsl~GlPP~  386 (486)
T PRK08676        362 -----VFRLQPVAAWGVILGSAAIIGMPPF  386 (486)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----8866389999999999999877675


No 77 
>PRK01528 truB tRNA pseudouridine synthase B; Provisional
Probab=20.46  E-value=26  Score=14.92  Aligned_cols=30  Identities=23%  Similarity=0.179  Sum_probs=26.7

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             999999997278998574453188899999
Q gi|254780860|r   37 DRKVWAAVQLRRGPNVVGPWGLLQSFADFL   66 (348)
Q Consensus        37 eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~   66 (348)
                      ..++.+++.++.|-.|+|-.|-|-|+|.++
T Consensus        16 S~~vv~~vkk~~~~~KvGH~GTLDP~AtGv   45 (293)
T PRK01528         16 SAKLVSIVKKILGKVKIGHAGTLDVEAEGI   45 (293)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf             899999999984898057686788757015


No 78 
>PRK06041 flagellar assembly protein J; Reviewed
Probab=20.36  E-value=55  Score=12.90  Aligned_cols=113  Identities=20%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             HHHCCCCCCCCCHHHH-HHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             5430100357608888-9875430232011588999-9999999999997323655-43122366665689999999999
Q gi|254780860|r  221 TNRPPFDLSEAESELV-AGYMVEYSSTPYLLFMLAE-YSTIVLMCTLASILFLGGW-LPPFDISLFKSIPGFFWLVFKTL  297 (348)
Q Consensus       221 ~~R~PFD~~EaEsELv-~G~~tEYsG~~~~l~~l~e-y~~~~~~s~l~~~lFlGg~-~~p~~~~~~~~l~~~~~~~~k~~  297 (348)
                      .+..==|+-+.|+|.+ +-+.+||-+....+=.+.| |..+.+...++.+...=.. ..+..+.....    ...+.-..
T Consensus       157 SG~~~~eFL~~Eq~~~~~~y~~~ye~~LesLd~~~e~YvSll~S~~f~~v~~~I~~il~~~~~~~~l~----~~~~~~~~  232 (547)
T PRK06041        157 SGEPLKEFLKQEQDTVMEIYKTFYERALESLDKWKDAYVSLLLSVTFVATFIIISPILYGIDITTTLS----LSLLLILF  232 (547)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHHHH
T ss_conf             69987999999999999999999999999999999999999999999999999999991888899999----99999999


Q ss_pred             HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999741012----------5499998854278999999999999
Q gi|254780860|r  298 GLFFMVAMVKAFVPR----------YRYDQLMRLGWKVFLPLSFAMVLIV  337 (348)
Q Consensus       298 ~~~~~~i~ir~~~pR----------~R~Dq~~~~~Wk~llpl~l~~~~~~  337 (348)
                      +-......++...|+          =+.|.-++-..+..+|++.+..++.
T Consensus       233 i~~~~v~~i~~~~P~Dp~~~~~~~~t~~~~~i~~~~~i~i~~~~i~~~~l  282 (547)
T PRK06041        233 IEVGGVYVIYKAVPKDPKWHTLEIKSKEQTKIRKLLIISVPLSVILVLLL  282 (547)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999983289983011356798789999999999999999999999


Done!