RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H
[Candidatus Liberibacter asiaticus str. psy62]
         (348 letters)



>2zv6_A Serpin B3; serine proteinase inhibitor, reactive site loop,
           acetylation, alternative splicing, cytoplasm,
           polymorphism, protease inhibitor; 2.70A {Homo sapiens}
           (A:43-227,A:291-377)
          Length = 272

 Score = 27.1 bits (59), Expect = 4.0
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 262 MCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQ 317
           +  + +I F G W   F+    K    F+        +  M   V   +PR++ ++
Sbjct: 143 LVLVNAIYFKGQWEKKFNKEDTKEEK-FWPNKNTYKSIQMMRQYVDLHLPRFKVEE 197


>2ex2_A Penicillin-binding protein 4; cephem, penem, D-
           alanyl-D-alanine-carboxypeptidase, D-alanyl-D-alanine-
           endopeptidase, hydrolase; 1.55A {Escherichia coli}
           (A:60-137,A:231-275)
          Length = 123

 Score = 26.3 bits (58), Expect = 6.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 91  SVILSLSAWAVVPVADGWIIADINVGILYILAI--SSLEIYGIIIGG 135
           +V++  S +A    A GW   D++ G  Y  AI    L+  GI   G
Sbjct: 56  NVLIDTSIFASHDKAPGWPWNDMD-GASYAGAILKYELKQAGITWSG 101


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.9 bits (57), Expect = 9.3
 Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 3/16 (18%)

Query: 14 FMAIKS---IVFLVGL 26
           M+I+S   +VF  G+
Sbjct: 5  VMSIESLVEVVFYRGM 20


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.332    0.146    0.455 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,648,868
Number of extensions: 115107
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 19
Length of query: 348
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 259
Effective length of database: 1,947,404
Effective search space: 504377636
Effective search space used: 504377636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.2 bits)