RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H
[Candidatus Liberibacter asiaticus str. psy62]
(348 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 33.4 bits (76), Expect = 0.070
Identities = 40/199 (20%), Positives = 67/199 (33%), Gaps = 64/199 (32%)
Query: 23 LVGLLI-FIAYVLLMDRKVWAAVQLRRGPNVVG---PWGLLQSFADFLKFVFKEPIIPSK 78
LVG LI F A L +L R GL + L+++ P K
Sbjct: 183 LVGDLIKFSAETLS---------ELIRTTLDAEKVFTQGL-----NILEWLENPSNTPDK 228
Query: 79 SNKILFLL-APLVSV----ILSLSAWAVVPVADGWIIADINVGIL--YILAIS--SLEIY 129
+LL P +S ++ L+ + V + G L Y+ + S
Sbjct: 229 D----YLLSIP-ISCPLIGVIQLAHYVVT-----AKLLGFTPGELRSYLKGATGHS---Q 275
Query: 130 GII----IGG---WASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVY 182
G++ I W S F ++R A ++ + IG+ + +L +
Sbjct: 276 GLVTAVAIAETDSWES-----FFVSVRKAITVLFF---IGVRCY---EAYPNTSLPPSIL 324
Query: 183 --SQKSGLGTFLGFPPSML 199
S ++ G P ML
Sbjct: 325 EDSLENNEGV----PSPML 339
>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane
protein, P-type ATPase, HAD fold, hydrolase; HET: ADP
TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1
c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A*
1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A*
2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A*
3fgo_A* 3fpb_A* 3fps_A* ...
Length = 994
Score = 30.3 bits (67), Expect = 0.63
Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 4/160 (2%)
Query: 182 YSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMV 241
S K L + F M ++ + + + AE
Sbjct: 822 RSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHP 881
Query: 242 EYSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFK----SIPGFFWLVFKTL 297
+ +F E T+ L + + + SL + + ++
Sbjct: 882 HFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSM 941
Query: 298 GLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIV 337
L F++ V ++ L W + L +S ++ +
Sbjct: 942 SLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLD 981
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A 1iwf_A
Length = 1034
Score = 28.6 bits (63), Expect = 2.0
Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 6/164 (3%)
Query: 174 SLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAES 233
+ L Y Q + +F GF + + + E +
Sbjct: 856 NEPLAAYSYFQIGAIQSFAGFTDYFT-AMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQ 914
Query: 234 ELVAGYMVEYSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLV 293
E G + T Y +F + +I + ++ L F F++ +
Sbjct: 915 EWTFGQRLYQQYTCYTVFFI----SIEMCQIADVLIRKTRRLSAFQQGFFRN-RILVIAI 969
Query: 294 FKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIV 337
+ + + + + + W V +P + +
Sbjct: 970 VFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYD 1013
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM
TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A
{Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Length = 269
Score = 28.1 bits (62), Expect = 2.7
Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNV 52
+++FL +L + Y L ++++WA V+ ++ NV
Sbjct: 229 AGFTAVMFLT-VLSVLLY--LTNKRLWAGVKGKKKTNV 263
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 2ziy_A*
Length = 448
Score = 28.0 bits (61), Expect = 3.6
Identities = 19/229 (8%), Positives = 51/229 (22%), Gaps = 7/229 (3%)
Query: 89 LVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGAL 148
S++ + WI + + + + + + + +
Sbjct: 82 TFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPM 141
Query: 149 RSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYW----- 203
++ +M I ++ V + ++ + +
Sbjct: 142 AASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNI 201
Query: 204 --LALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEYSTIVL 261
+ + F I N + + + +
Sbjct: 202 LCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAK 261
Query: 262 MCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFV 310
+ + FL W P ++L W+ L M A A
Sbjct: 262 ISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIH 310
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.7 bits (60), Expect = 3.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 11/31 (35%)
Query: 124 SSLEIYGIIIGGWASNSKYAFLGALRSAAQM 154
+SL++Y A +S A A++ A M
Sbjct: 27 ASLKLY-------ADDSAPAL--AIK--ATM 46
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein,
rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A
{Rhodobacter capsulatus}
Length = 258
Score = 27.4 bits (60), Expect = 5.5
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRR 48
M + ++V L LL + Y L ++++WA + +
Sbjct: 227 MGLVAMVMLG-LLSVMLY--LTNKRLWAPYKGHK 257
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 26.3 bits (57), Expect = 9.6
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)
Query: 128 IYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSG 187
I+ + G+A +YAF+ + ++ + LV+ + + DI Q
Sbjct: 395 IFILSRAGYAGIQRYAFIWTGDNTPSWDDLKLQLQLVL-GLSISGVPFVGCDIGGFQGRN 453
Query: 188 LGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTP 247
++ +Y LALF F + P F + ++ + Y P
Sbjct: 454 FAEIDNSMDLLVKYYALALFFPFYRSHKATDGIDTEPVFLPDYYKEKVKEIVELRYKFLP 513
Query: 248 YLLFMLAEYST 258
Y+ + E S
Sbjct: 514 YIYSLALEASE 524
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.332 0.146 0.455
Gapped
Lambda K H
0.267 0.0448 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,012,160
Number of extensions: 135740
Number of successful extensions: 336
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 28
Length of query: 348
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 255
Effective length of database: 3,438,538
Effective search space: 876827190
Effective search space used: 876827190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.4 bits)