BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H
[Candidatus Liberibacter asiaticus str. psy62]
         (348 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 348

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/348 (100%), Positives = 348/348 (100%)

Query: 1   MSSFIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQ 60
           MSSFIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQ
Sbjct: 1   MSSFIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQ 60

Query: 61  SFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYI 120
           SFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYI
Sbjct: 61  SFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYI 120

Query: 121 LAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDI 180
           LAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDI
Sbjct: 121 LAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDI 180

Query: 181 VYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYM 240
           VYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYM
Sbjct: 181 VYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYM 240

Query: 241 VEYSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLF 300
           VEYSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLF
Sbjct: 241 VEYSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLF 300

Query: 301 FMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFLKIYTLIR 348
           FMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFLKIYTLIR
Sbjct: 301 FMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFLKIYTLIR 348


>gi|254780592|ref|YP_003065005.1| TPR repeat-containing protein [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 271

 Score = 24.3 bits (51), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 8  FFVP--LFFMAIKSIVFLVGLLIF 29
           F P  LF   IK IVFL+ LL+F
Sbjct: 4  LFCPVILFLKKIKCIVFLIPLLLF 27


>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 386

 Score = 23.5 bits (49), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 31/65 (47%)

Query: 83  LFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKY 142
           LF   PLV+V+   S    + + D W +  +   +L + A +S  I  ++ GG  S SK 
Sbjct: 219 LFRGVPLVTVLFMASIMLPLFLPDTWDVDKLLRALLGVSAFASAYIAEVLRGGLQSISKG 278

Query: 143 AFLGA 147
            F  A
Sbjct: 279 QFEAA 283


>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 170

 Score = 23.5 bits (49), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 69  VFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEI 128
           +F +PI+   S  I  + + ++++I ++    V+   DG  +A + +G+LY L +  L+ 
Sbjct: 8   IFPDPILRRVSRPIEKINSDIMNLIDNM--LEVMYSTDGIGLAAVQIGVLYRLVVIDLQD 65

Query: 129 YG 130
           + 
Sbjct: 66  HA 67


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.332    0.146    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,014
Number of Sequences: 1233
Number of extensions: 8551
Number of successful extensions: 36
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 11
length of query: 348
length of database: 328,796
effective HSP length: 75
effective length of query: 273
effective length of database: 236,321
effective search space: 64515633
effective search space used: 64515633
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 39 (19.6 bits)