HHsearch alignment for GI: 254780861 and conserved domain: COG1143
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion].
Probab=100.00 E-value=0 Score=301.28 Aligned_cols=154 Identities=45% Similarity=0.854 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCC
Q ss_conf 93689999999999999999999998406985225787577568000572378740588742213452232533088321
Q gi|254780861|r 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 (163)
Q Consensus 1 m~~~~~~~~~~~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i 80 (163)
T Consensus 1 ~~~~~~~~~~~~~-~~~~~l~~~~K~~fk~~vT~~YP~e~~~~~~rfRG~~~l~~-----~~CIgC~lCa~iCP~~aI~m 74 (172)
T COG1143 1 MKLKEAAKVKFLL-DFLKGLWTTLKNLFKKPVTIEYPEEKIPLSPRFRGRHVLDR-----DKCIGCGLCANICPANAITM 74 (172)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCEEECCC-----CCCCCHHHHHHHCCCCCEEE
T ss_conf 9288887877789-99999999999873787300076656899987343442463-----57826168886398473189
Q ss_pred CCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHH----HHHHHH
Q ss_conf 0122454473357788850555586887233378310303677356757687733299999884899999----998507
Q gi|254780861|r 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES----EIVRNI 156 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~Ll~~g~~~~~----~~~~~~ 156 (163)
T Consensus 75 ~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e~a~~~r~dl~~~~~~ll~~~~~~~~~~~~~~~~~~ 154 (172)
T COG1143 75 ETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFELASYKREDLVYDKERLLAPPDKKEEDKPFEIARLL 154 (172)
T ss_pred EECCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCHHHHCCCCCEEECCCCHHHHHCCHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 97656788842133431433512611751423966562277411542454676513478761683212346532035543
Q ss_pred HHCC
Q ss_conf 7455
Q gi|254780861|r 157 VTDS 160 (163)
Q Consensus 157 ~~d~ 160 (163)
T Consensus 155 ~~~~ 158 (172)
T COG1143 155 ALDA 158 (172)
T ss_pred CCCH
T ss_conf 2231