HHsearch alignment for GI: 254780861 and conserved domain: PRK05352
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional.
Probab=96.30 E-value=0.00034 Score=45.55 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=34.5
Q ss_pred CCCCC-CEECCCCHHHHHHCCCCCC--CCCCCCCCCEEEEEEEEEHHHCCC--CCCCHHHCCCC
Q ss_conf 88742-2134522325330883210--122454473357788850555586--88723337831
Q gi|254780861|r 58 NGEER-CIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMIKCIY--CGLCQEACPVD 116 (163)
Q Consensus 58 ~~~ek-Ci~C~~C~~~CP~~aI~i~--~~~~~~~~~~~~~~~~id~~~Ci~--Cg~Cv~vCP~~ 116 (163)
T Consensus 370 nG~~Ra~I~~g~~e~v~P~di~P~qL~ka~~~~d~e~~-e--~lGi~e~~eED~alcsyvCpSK 430 (448)
T PRK05352 370 NGSERAMVPIGNYERVMPLDILPTLLLRALIAGDTDEA-Q--ALGALELDEEDLALCTFVCPGK 430 (448)
T ss_pred CCCCCCEEECCHHHHHCCCCCCHHHHHHHHHCCCHHHH-H--HCCCCCCCHHHCCEEEEECCCH
T ss_conf 88644378867476427885689999999870699999-8--7599033853641464588861