HHsearch alignment for GI: 254780861 and conserved domain: PRK05888
>PRK05888 NADH dehydrogenase subunit I; Provisional.
Probab=100.00 E-value=0 Score=330.99 Aligned_cols=157 Identities=62% Similarity=1.111 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCC
Q ss_conf 89999999999999999999998406985225787577568000572378740588742213452232533088321012
Q gi|254780861|r 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~ 83 (163)
T Consensus 3 ~~~~~~~--~~~~~~Gl~vt~k~~f~k~vT~qYP~ek~~~~~r~RG~~~l~~d~~g~ekCi~C~lC~~~CP~~~I~i~~~ 80 (172)
T PRK05888 3 VKEALVG--FKKSLKGLWVTLKYFFKKKVTIQYPEEKLPLSPRFRGRHALRRYPNGEERCIACKLCEAICPANAITIEAA 80 (172)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCHHHHCCCCCCEEEEE
T ss_conf 8999998--99999669999999759972400988647678552342776406888740357765565588776789875
Q ss_pred CCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHHHHH-------------HHHHHH
Q ss_conf 2454473357788850555586887233378310303677356757687733299999884-------------899999
Q gi|254780861|r 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN-------------GDRWES 150 (163)
Q Consensus 84 ~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~Ll~~-------------g~~~~~ 150 (163)
T Consensus 81 ~~-~~g~k~~~~~~Id~~rCifCGlCve~CP~~AI~~t~~~E~a~~~R~~liy~k~~Ll~~~~~~~~~~~~~~~g~~~~~ 159 (172)
T PRK05888 81 ER-EDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDFELAEETREDLIYTKEKLLANYRVAGLAILPKGKGDRYEE 159 (172)
T ss_pred CC-CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 08-99857745777534605788882210888724478863247688889366999972230003455554567635889
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9985077455789
Q gi|254780861|r 151 EIVRNIVTDSPYR 163 (163)
Q Consensus 151 ~~~~~~~~d~~~r 163 (163)
T Consensus 160 ~~~~~~~~~~~~~ 172 (172)
T PRK05888 160 EIAIDRAADLPYR 172 (172)
T ss_pred HHHHHHHCCCCCC
T ss_conf 9887552033579