HHsearch alignment for GI: 254780861 and conserved domain: TIGR01971
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I; InterPro: IPR010226 This entry represents the I subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain 'I' subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=100.00 E-value=0 Score=320.17 Aligned_cols=122 Identities=54% Similarity=1.003 Sum_probs=117.4
Q ss_pred HHHHHHHHHCCCC-CCCCCCCCCCCCC-CHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCC-C----CCCCE
Q ss_conf 9999999840698-5225787577568-00057237874058874221345223253308832101224-5----44733
Q gi|254780861|r 19 AFFLCLRYFFKAK-TTINYPFEKGSTS-PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-C----HDGTR 91 (163)
Q Consensus 19 gl~~t~k~~~~~~-~T~~YP~e~~~~~-~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~-~----~~~~~ 91 (163)
T Consensus 1 g~~~~~~y~f~~~rvT~~YP~e~~~LpypRfRG~i~L~r~p-G~e~CiaC~LC~~~CP~~~I~~~~~~~~~enPv~~g~r 79 (129)
T TIGR01971 1 GLGLTLKYFFSKPRVTLQYPEEKLYLPYPRFRGRIVLTRDP-GEEKCIACELCARVCPADAIRVVTEERETENPVEDGKR 79 (129)
T ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCEEECCCCEEECCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 90002245327898977788677667889754258765369-97135643010000754441565203888887323652
Q ss_pred EEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHH
Q ss_conf 57788850555586887233378310303677356757687733299999
Q gi|254780861|r 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 (163)
Q Consensus 92 ~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~L 141 (163)
T Consensus 80 ~~~~y~In~grCifCGlC~E~CP~~AI~lt~~fE~a~~~R~~L~y~~~~L 129 (129)
T TIGR01971 80 RLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFELATYTRSDLVYDKEDL 129 (129)
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 37896213212223307511271015433730134011031225241139