HHsearch alignment for GI: 254780861 and conserved domain: TIGR02936

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=98.89  E-value=7.3e-10  Score=80.22  Aligned_cols=61  Identities=26%  Similarity=0.604  Sum_probs=45.0

Q ss_pred             CCCCCEECCCCHHHHHHCCCCCCCC--------------CCCCC--CCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf             8742213452232533088321012--------------24544--733577888505555868872333783103036
Q gi|254780861|r   59 GEERCIACKLCEAICPAQAITIESG--------------PRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG  121 (163)
Q Consensus        59 ~~ekCi~C~~C~~~CP~~aI~i~~~--------------~~~~~--~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~  121 (163)
T Consensus        19 D~~kCIGCGRCfKVCgr~Vl~L~G~~EeGE~V~~~~de~d~dDdE~~rkvM~--~~~~~~CIGC~AC~rVCPk~CqTH~   95 (96)
T TIGR02936        19 DQEKCIGCGRCFKVCGRDVLTLKGINEEGELVDPSDDEEDDDDDEIERKVMV--LANPGNCIGCGACARVCPKKCQTHA   95 (96)
T ss_pred             CHHCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEE--ECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             4310754546314178676422212467857638888733468873442777--4287785042347705688631058