HHsearch alignment for GI: 254780861 and conserved domain: TIGR02936
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=98.89 E-value=7.3e-10 Score=80.22 Aligned_cols=61 Identities=26% Similarity=0.604 Sum_probs=45.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCC--------------CCCCC--CCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 8742213452232533088321012--------------24544--733577888505555868872333783103036
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESG--------------PRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~--------------~~~~~--~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
T Consensus 19 D~~kCIGCGRCfKVCgr~Vl~L~G~~EeGE~V~~~~de~d~dDdE~~rkvM~--~~~~~~CIGC~AC~rVCPk~CqTH~ 95 (96)
T TIGR02936 19 DQEKCIGCGRCFKVCGRDVLTLKGINEEGELVDPSDDEEDDDDDEIERKVMV--LANPGNCIGCGACARVCPKKCQTHA 95 (96)
T ss_pred CHHCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEE--ECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4310754546314178676422212467857638888733468873442777--4287785042347705688631058