HHsearch alignment for GI: 254780861 and conserved domain: TIGR02936
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=96.65 E-value=0.00051 Score=44.44 Aligned_cols=26 Identities=38% Similarity=0.722 Sum_probs=19.6
Q ss_pred EEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 85055558688723337831030367
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
T Consensus 17 ~ID~~kCIGCGRCfKVCgr~Vl~L~G 42 (96)
T TIGR02936 17 SIDQEKCIGCGRCFKVCGRDVLTLKG 42 (96)
T ss_pred HCCHHCCCCCCCCCCCCCCCCCEEEE
T ss_conf 11431075454631417867642221