RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I
[Candidatus Liberibacter asiaticus str. psy62]
(163 letters)
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_9* 3iam_9* 3ias_9*
Length = 182
Score = 138 bits (349), Expect = 4e-34
Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
+ LK + + L+Y F T+ YP + PRF G H L R+PNG E+CI C LC
Sbjct: 1 MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60
Query: 71 AICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
A CPA AI +E G R Y+I+M++CI+CGLC+EACP AIV G +FE
Sbjct: 61 AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120
Query: 126 FATETRQELYYDKERLLNN--GDRWESEIVRN 155
A +L Y KE +L + G + + +
Sbjct: 121 MADYEYSDLVYGKEDMLVDVVGTKPQRREAKR 152
>1jb0_C Photosystem I iron-sulfur center; membrane protein,
multiprotein-pigment complex, photosynthesis; HET: CL1
PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
d.58.1.2 PDB: 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 2o01_C*
Length = 80
Score = 60.2 bits (145), Expect = 2e-10
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
H ++ Y + CI C C CP + + + C+ C C+
Sbjct: 2 HTVKIY----DTCIGCTQCVRACPTDVLEMVPWD---GCKAGQIASSPRTEDCVGCKRCE 54
Query: 111 EACPVDAI 118
ACP D +
Sbjct: 55 TACPTDFL 62
Score = 31.3 bits (70), Expect = 0.10
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
E C+ CK CE CP ++I + TR
Sbjct: 44 TEDCVGCKRCETACPTDFLSIRVYLG-AETTRSM 76
Score = 29.8 bits (66), Expect = 0.35
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 102 KCIYCGLCQEACPVDAIV 119
CI C C ACP D +
Sbjct: 9 TCIGCTQCVRACPTDVLE 26
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
{Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
1fca_A 1clf_A 1dur_A
Length = 55
Score = 58.4 bits (141), Expect = 6e-10
Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
E CI+C CE CP AI+ RY ID CI CG C CPVDA V
Sbjct: 5 NEACISCGACEPECPVNAISSGD-----------DRYVIDADTCIDCGACAGVCPVDAPV 53
Query: 120 E 120
+
Sbjct: 54 Q 54
Score = 31.9 bits (72), Expect = 0.066
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
CI CG C+ CPV+AI G +
Sbjct: 7 ACISCGACEPECPVNAISSGDD 28
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron,
iron-sulfur, metal-binding, transport; 1.05A
{Allochromatium vinosum} PDB: 1blu_A 3exy_A
Length = 82
Score = 56.0 bits (134), Expect = 4e-09
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
+ CI C +CE CP AI+ + + T + + C E CPVDAI+
Sbjct: 5 TDECINCDVCEPECPNGAISQGDETYVIEPSLCT-----ECVGHYETSQCVEVCPVDAII 59
Query: 120 EGPNFEFATETRQELYYDKERLLNNG 145
+ P+ E ET EL ER+ G
Sbjct: 60 KDPSHE---ETEDELRAKYERITGEG 82
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
{Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Length = 103
Score = 54.8 bits (131), Expect = 8e-09
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
+ CIA C CP P ++ ++ CI+C C CPV AI
Sbjct: 42 FDLCIADGSCINACPVNVFQWYDTPGHPASEKKA--DPVNEQACIFCMACVNVCPVAAI 98
Score = 34.0 bits (77), Expect = 0.015
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 98 IDMIKCIYCGLCQEACPVDAI 118
+D CI G C ACPV+
Sbjct: 40 VDFDLCIADGSCINACPVNVF 60
Score = 29.0 bits (64), Expect = 0.52
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 56 YPNGEERCIACKLCEAICPAQAITIE 81
P E+ CI C C +CP AI ++
Sbjct: 76 DPVNEQACIFCMACVNVCPVAAIDVK 101
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 166
Score = 53.9 bits (129), Expect = 1e-08
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 60 EERCIACK-----LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
+C CK C ICP + ++ ++ + C C C + CP
Sbjct: 6 PSKCDGCKGGEKTACMYICPNDLMILDPEEM--------KAFNQEPEACWECYSCIKICP 57
Query: 115 VDAIVEGPNFEFA 127
AI P +FA
Sbjct: 58 QGAITARPYADFA 70
Score = 31.6 bits (71), Expect = 0.092
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 98 IDMIKCIYC-----GLCQEACPVDAIVEGPN 123
+D KC C C CP D ++ P
Sbjct: 4 VDPSKCDGCKGGEKTACMYICPNDLMILDPE 34
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
[4Fe-4S] clusters, iron- sulfur clusters, reduction
potential; 1.65A {Escherichia coli k-12}
Length = 85
Score = 54.0 bits (129), Expect = 2e-08
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 22/95 (23%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEAC 113
++CI C +CE CP +AI++ Y+I+ KC C CQ+ C
Sbjct: 5 TKKCINCDMCEPECPNEAISMG-----------DHIYEINSDKCTECVGHYETPTCQKVC 53
Query: 114 PVDA-IVEGPNFEFATETRQELYYDKERLLNNGDR 147
P+ IV+ P ET ++L +DK L+++ D+
Sbjct: 54 PIPNTIVKDPAH---VETEEQL-WDKFVLMHHADK 84
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica K172}
SCOP: d.58.1.1
Length = 80
Score = 53.3 bits (127), Expect = 2e-08
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
+ C AC C CP +AIT Y ID KC C C+ CP
Sbjct: 6 DDCTACDACVEECPNEAIT-----------PGDPIYVIDPTKCSECVGAFDEPQCRLVCP 54
Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141
D I + P++ ETR+EL +RL
Sbjct: 55 ADCIPDNPDYR---ETREELQEKYDRL 78
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction
potential, iron binding protein electron transport;
1.32A {Pseudomonas aeruginosa}
Length = 82
Score = 52.5 bits (125), Expect = 4e-08
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 20/87 (22%)
Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
+ CI C +CE CP AI+ + Y ID C C CQ+ CP
Sbjct: 6 DDCINCDVCEPECPNGAIS-----------QGEEIYVIDPNLCTECVGHYDEPQCQQVCP 54
Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141
VD I E++ +L ++
Sbjct: 55 VDCIPLDDANV---ESKDQLMEKYRKI 78
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 49.7 bits (118), Expect = 3e-07
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 60 EERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115
EE CI C C C QAI D C C LC CP+
Sbjct: 950 EEMCINCGKCYMTCNDSGYQAIQF-------DPETH---LPTVTDTCTGCTLCLSVCPII 999
Query: 116 DAI 118
D I
Sbjct: 1000 DCI 1002
Score = 31.2 bits (70), Expect = 0.12
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 54 RRYPNGEERCIACKLCEAICPAQ-AITIESGPRCHDGTR 91
P + C C LC ++CP I + S ++ R
Sbjct: 977 THLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKR 1015
Score = 26.9 bits (59), Expect = 2.4
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 103 CIYCGL--CQEACPVDAIV 119
C+ C CQ++CP +
Sbjct: 79 CLKCADAPCQKSCPTHLDI 97
Score = 26.5 bits (58), Expect = 2.8
Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 98 IDMIKCIYCGLCQEAC---PVDAI 118
ID CI CG C C AI
Sbjct: 948 IDEEMCINCGKCYMTCNDSGYQAI 971
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET:
HEC; NMR {Desulfovibrio desulfuricans} SCOP: i.4.1.1
Length = 59
Score = 48.6 bits (115), Expect = 6e-07
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
E CI C+ C +CP I+ + +ACPV+AI
Sbjct: 6 HEECIGCESCVELCPEVFAMIDGEEK--------AMVTAPDSTAECAQDAIDACPVEAI 56
Score = 29.8 bits (66), Expect = 0.28
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120
ID +CI C C E CP +
Sbjct: 4 IDHEECIGCESCVELCPEVFAMI 26
Score = 29.4 bits (65), Expect = 0.36
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIE 81
+ + CP +AI+ E
Sbjct: 28 GEEKAMVTAPDSTAECAQDAIDACPVEAISKE 59
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR
{Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Length = 58
Score = 47.5 bits (112), Expect = 1e-06
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
+ C+AC+ C ICP E G + ++CP +AIV
Sbjct: 5 NDDCMACEACVEICPDVFEMNEEGDK--------AVVINPDSDLDCVEEAIDSCPAEAIV 56
Query: 120 E 120
Sbjct: 57 R 57
Score = 25.2 bits (54), Expect = 6.9
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 54 RRYPNGEERCIACKLCEAICPAQAIT 79
N + + CPA+AI
Sbjct: 31 AVVINPDSDLDCVEEAIDSCPAEAIV 56
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
X-RAY crystallography, hydrogene metabolism, periplasm;
1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1
d.58.1.5 PDB: 1e08_A* 1gx7_A*
Length = 421
Score = 47.6 bits (113), Expect = 1e-06
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI-KCIYCGLCQEACPVDAI 118
E +CI C C CP AI E G I I CI CG C CP +AI
Sbjct: 32 EAKCIGCDTCSQYCPTAAIFGEMGEPHS----------IPHIEACINCGQCLTHCPENAI 81
Query: 119 VEGPNFE 125
E ++
Sbjct: 82 YEAQSWV 88
Score = 32.2 bits (73), Expect = 0.053
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121
ID KCI C C + CP AI
Sbjct: 30 IDEAKCIGCDTCSQYCPTAAIFGE 53
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine
cobalt(III), electron transport; HET: NCO; 1.50A
{Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A
Length = 66
Score = 47.5 bits (112), Expect = 1e-06
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
++ CI +C ++CP + G + V D EACPV AI
Sbjct: 8 QDTCIGDAICASLCPDVFEMNDEGKA-----QPKVEVIEDEELYNCAKEAMEACPVSAI 61
Score = 30.9 bits (69), Expect = 0.15
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120
+ +D CI +C CP +
Sbjct: 3 KVSVDQDTCIGDAICASLCPDVFEMN 28
Score = 30.1 bits (67), Expect = 0.26
Identities = 10/31 (32%), Positives = 10/31 (32%)
Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIE 81
EE K CP AITIE
Sbjct: 34 QPKVEVIEDEELYNCAKEAMEACPVSAITIE 64
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis,
geometry of [4Fe-4S] cluster, electron transport; 0.92A
{Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB:
1ir0_A 1wtf_A*
Length = 81
Score = 45.7 bits (108), Expect = 4e-06
Identities = 16/59 (27%), Positives = 20/59 (33%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
+E CIAC C A P E G ++ I E CP D+I
Sbjct: 8 KETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSI 66
Score = 30.0 bits (67), Expect = 0.29
Identities = 4/40 (10%), Positives = 8/40 (20%)
Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
+ + CP +I + P
Sbjct: 33 AYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP 72
Score = 27.6 bits (61), Expect = 1.3
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 98 IDMIKCIYCGLCQEACP 114
+D CI CG C A P
Sbjct: 6 VDKETCIACGACGAAAP 22
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB:
1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Length = 150
Score = 45.2 bits (106), Expect = 7e-06
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 60 EERCIACK-----LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
E+C CK CE ICP +T++ Y+ + C C C + CP
Sbjct: 7 PEKCDGCKALERTACEYICPNDLMTLDKEKMKA--------YNREPDMCWECYSCVKMCP 58
Query: 115 VDAIVEGPNFEFA 127
AI +++
Sbjct: 59 QGAIDVRGYVDYS 71
Score = 30.6 bits (68), Expect = 0.18
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 98 IDMIKCIYCG-----LCQEACPVDAIVEGPNFEFATETRQEL 134
++ KC C C+ CP D + A ++
Sbjct: 5 VNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDM 46
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur,
azotobacter, hydrogen bonds, stability, high resolution;
1.64A {Thermus aquaticus} SCOP: d.58.1.2
Length = 78
Score = 45.0 bits (106), Expect = 8e-06
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
E CI K C +CP + I ++ I +CI CG C ACPV+A
Sbjct: 5 CEPCIGVKDQSCVEVCPVECIYDGGD-----------QFYIHPEECIDCGACVPACPVNA 53
Query: 118 IVEGPNFE 125
I +
Sbjct: 54 IYPEEDVP 61
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
3ir7_B* 1y4z_B*
Length = 512
Score = 44.3 bits (104), Expect = 1e-05
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%)
Query: 38 FEKGSTSPRFRG--EHALRRYPNGE-----ERCIACKL--CEAICPAQAITIESGPRCHD 88
F+K + F + ++ N C C C A CP+ AI
Sbjct: 152 FDKLAKDKNFDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIY-------KR 204
Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
V D D KC +C CP I
Sbjct: 205 EEDGIVLIDQD--KCRGWRMCITGCPYKKI 232
Score = 40.9 bits (95), Expect = 1e-04
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
++C ++C CP + I G + I+ +C E C
Sbjct: 215 DKCRGWRMCITGCPYKKIYFNWK----SGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYL 270
Query: 121 G 121
G
Sbjct: 271 G 271
Score = 31.6 bits (71), Expect = 0.097
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 98 IDMIKCIYCGLCQEACPVDAI 118
+++ KCI C C C
Sbjct: 11 LNLDKCIGCHTCSVTCKNVWT 31
Score = 26.2 bits (57), Expect = 3.7
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 61 ERCIACKLCEAICPAQAITIE 81
++CI C C C + E
Sbjct: 14 DKCIGCHTCSVTCKNVWTSRE 34
>1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur
subunit; oxidoreductase, selenium, selenocysteine,
seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Length = 294
Score = 43.7 bits (102), Expect = 2e-05
Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
CI C C A CP + D +D + C + CP AI G
Sbjct: 132 NCIGCGYCIAGCPFNIPRLNKE----DNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFG 187
Query: 122 PNFEFATETRQELYYDKER 140
E Q + K R
Sbjct: 188 TKKEMLELAEQRVAKLKAR 206
Score = 32.5 bits (73), Expect = 0.045
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 11/73 (15%)
Query: 48 RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
++ + ++ C+ C+ C CP+ + +G D CI
Sbjct: 85 TEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAI----IQYANG-----IVDFQSENCIG 135
Query: 106 CGLCQEACPVDAI 118
CG C CP +
Sbjct: 136 CGYCIAGCPFNIP 148
Score = 29.8 bits (66), Expect = 0.29
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 98 IDMIKCIYCGLCQEAC 113
ID+ CI C CQ AC
Sbjct: 34 IDVSTCIGCKACQVAC 49
>2v2k_A Ferredoxin; iron, 3Fe-4S, 4Fe-4S, transport, iron-sulfur,
mycobacterium tuberculosis, Fe-S cluster, metal-binding,
electron transfer; 1.6A {Mycobacterium smegmatis}
Length = 105
Score = 43.6 bits (102), Expect = 2e-05
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 17/83 (20%)
Query: 60 EERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
E C+ K C CP I + I +C+ CG C+ CPV+A
Sbjct: 5 AEPCVDVKDKACIEECPVDCIYEGAR-----------MLYIHPDECVDCGACEPVCPVEA 53
Query: 118 IVEGPNFEFATETRQELYYDKER 140
I +E + Y
Sbjct: 54 IY----YEDDVPDQWSSYAQANA 72
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 43.4 bits (102), Expect = 2e-05
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 33/122 (27%)
Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI------------------T 79
F G++ RG A+ E CI C C +CP AI
Sbjct: 664 FPLGTSQFEKRGV-AINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTA 722
Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIV----------EGPNFEFA 127
+E+ + G + ++ I+ + C+ CG C + CP A+V + PN E+A
Sbjct: 723 LEAKGKELKGYKFRIQ--INTLDCMGCGNCADICPPKEKALVMQPLDTQRDAQVPNLEYA 780
Query: 128 TE 129
Sbjct: 781 AR 782
Score = 33.0 bits (75), Expect = 0.037
Identities = 18/127 (14%), Positives = 28/127 (22%), Gaps = 4/127 (3%)
Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIA---CKLCEAI 72
V + + YP + E + N + + KL +
Sbjct: 598 VKMNTDAVDQAVTSLQEFKYPDSWKDAPAETKAEPMTNEFFKNVVKPILTQQGDKLPVSA 657
Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
A + CI C C CP AI+ E
Sbjct: 658 FEADGRFPLGTSQFEKRGVAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAP 717
Query: 133 ELYYDKE 139
+ E
Sbjct: 718 ANFTALE 724
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus
schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Length = 77
Score = 43.1 bits (101), Expect = 3e-05
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
E CI K C +CP I +Y ID CI CG C+ CPV A
Sbjct: 5 TEPCIGTKDASCVEVCPVDCIHEGED-----------QYYIDPDVCIDCGACEAVCPVSA 53
Query: 118 IV 119
I
Sbjct: 54 IY 55
Score = 28.1 bits (62), Expect = 0.97
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 60 EERCIACKLCEAICPAQAITIES 82
+ CI C CEA+CP AI E
Sbjct: 36 PDVCIDCGACEAVCPVSAIYHED 58
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga
maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Length = 60
Score = 41.3 bits (96), Expect = 9e-05
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
+ CI C +CE +CP + G + ++CP AI
Sbjct: 7 ADACIGCGVCENLCPDVFQLGDDGK---------AKVLQPETDLPCAKDAADSCPTGAI 56
Score = 29.4 bits (65), Expect = 0.39
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 60 EERCIACKLCEAICPAQAITIE 81
E K CP AI++E
Sbjct: 38 ETDLPCAKDAADSCPTGAISVE 59
Score = 27.9 bits (61), Expect = 1.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118
+ +D CI CG+C+ CP
Sbjct: 2 KVRVDADACIGCGVCENLCPDVFQ 25
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S
cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4
PDB: 1dfd_A 1fxr_A
Length = 64
Score = 41.2 bits (96), Expect = 1e-04
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
++ CIAC+ C I P + + D++ + CPV I
Sbjct: 8 QDECIACESCVEIAPGAFAMDPEIEKAYV-------KDVEGASQEEVEEAMDTCPVQCI 59
Score = 26.6 bits (58), Expect = 3.1
Identities = 5/28 (17%), Positives = 6/28 (21%)
Query: 54 RRYPNGEERCIACKLCEAICPAQAITIE 81
+ CP Q I E
Sbjct: 35 YVKDVEGASQEEVEEAMDTCPVQCIHWE 62
Score = 25.8 bits (56), Expect = 5.4
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
++ +D +CI C C E P ++
Sbjct: 3 KFYVDQDECIACESCVEIAPGAFAMDPEIE 32
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO
reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus
SP}
Length = 352
Score = 38.3 bits (88), Expect = 8e-04
Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
+ERC + C CP +AI T I+ C CP
Sbjct: 181 QERCKGHRHCVEACPYKAIYFNP----VSQTSEKCILCYPRIEKGIANACNRQCPGRVRA 236
Query: 120 EGP 122
G
Sbjct: 237 FGY 239
Score = 32.9 bits (74), Expect = 0.041
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 62 RCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
C C C A CP AI R +G V D + +C C EACP AI
Sbjct: 150 MCNHCTNPACLAACPTGAIYK----REDNGI---VLVDQE--RCKGHRHCVEACPYKAI 199
Score = 27.9 bits (61), Expect = 1.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 98 IDMIKCIYCGLCQEACP 114
ID+ KC+ C C AC
Sbjct: 23 IDLNKCLGCQTCTVACK 39
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
enzyme, MGD-cofactors, DMSO-reductase family,
4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Length = 274
Score = 37.4 bits (86), Expect = 0.001
Identities = 6/57 (10%), Positives = 8/57 (14%)
Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
+ K CP + D C C
Sbjct: 98 KAKGKKELLDTCPYGVMYWNEEENVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVY 154
Score = 29.0 bits (64), Expect = 0.54
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 98 IDMIKCIYCGLCQEAC 113
ID+ KC C C C
Sbjct: 8 IDVAKCQDCNNCFMGC 23
Score = 27.0 bits (59), Expect = 1.9
Identities = 16/88 (18%), Positives = 21/88 (23%), Gaps = 7/88 (7%)
Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT---- 90
G T+ RG ER + P + E+ P G
Sbjct: 28 ELNEWPGYTASMQRGHR--WMNIERRERGTYPRNDINYRPTPCMHCENAPCVAKGNGAVY 85
Query: 91 -RRTVRYDIDMIKCIYCGLCQEACPVDA 117
R ID K + CP
Sbjct: 86 QREDGIVLIDPEKAKGKKELLDTCPYGV 113
Score = 25.1 bits (54), Expect = 7.7
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 12/65 (18%)
Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------------CIYCGL 108
+C C C C + E R +I+ + C
Sbjct: 11 AKCQDCNNCFMGCMDEHELNEWPGYTASMQRGHRWMNIERRERGTYPRNDINYRPTPCMH 70
Query: 109 CQEAC 113
C+ A
Sbjct: 71 CENAP 75
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET;
alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
{Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B*
3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Length = 366
Score = 37.4 bits (86), Expect = 0.001
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
+ A CP A+ P + T +D+ KC+YCG C CP +
Sbjct: 207 IRKTCEIPSTVAACPTGALK----PDMKNKT-----IKVDVEKCMYCGNCYTMCPGMPLF 257
Query: 120 EG 121
+
Sbjct: 258 DP 259
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
dehydrogenase, selenocysteine, molybdopterin, MGD,
iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} SCOP: d.58.1.5
Length = 214
Score = 37.1 bits (85), Expect = 0.002
Identities = 16/114 (14%), Positives = 25/114 (21%), Gaps = 16/114 (14%)
Query: 45 PRFRGEHALRRYPNG-------EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
+ G + + + CP +
Sbjct: 85 DMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQMAKCD----MC 140
Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL-----YYDKERLLNNGD 146
ID I C +CP A+ G E L Y +L + D
Sbjct: 141 IDRITNGLRPACVTSCPTGAMNFGDLSEMEAMASARLAEIKAAYSDAKLCDPDD 194
Score = 26.7 bits (58), Expect = 2.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 98 IDMIKCIYCGLCQEAC 113
+D +C C CQ AC
Sbjct: 6 VDTTRCTACRGCQVAC 21
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_3* 3iam_3* 3ias_3*
Length = 783
Score = 36.2 bits (82), Expect = 0.003
Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 1/92 (1%)
Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
ERCI CK C + + + G + CPV A+++
Sbjct: 179 ERCIHCKRCVRYFEEVPGDEVLDFIERGV-HTFIGTMDFGLPSGFSGNITDICPVGALLD 237
Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEI 152
A E L G ++
Sbjct: 238 LTARFRARNWEMEETPTTCALCPVGCGITADT 269
Score = 27.0 bits (58), Expect = 2.5
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 96 YDIDMIKCIYCGLCQEAC 113
+D +CI+C C
Sbjct: 174 VILDRERCIHCKRCVRYF 191
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B*
Length = 386
Score = 35.8 bits (82), Expect = 0.005
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 49 GEHALRRYPNGEERCIACKLCEA-ICPAQAITIESGPRCHD-GTRRTVRYDIDMIKCIYC 106
G + R P + +LCE + A T P + ++ I+ +C+YC
Sbjct: 202 GLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYC 261
Query: 107 GLCQEACPVDAIVEGPNFEFA 127
G C CP + +G A
Sbjct: 262 GNCYTMCPALPLSDGTGDGIA 282
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate
reduction, oxidored sulfite reduction; HET: SRM; 1.76A
{Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A*
Length = 437
Score = 35.0 bits (80), Expect = 0.009
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYCG 107
+ A++ Y GE + A I E C G + ID C C
Sbjct: 248 QEAVKAYVGGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCM 307
Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
C P + E + + + +G + S ++ I + P+
Sbjct: 308 HCINTMPRALKI-------GDERGASILVGAKAPVLDGAQMGSLLIPFIAAEEPF 355
>3c7b_B Sulfite reductase, dissimilatory-type subunit beta; alpha/beta
fold, 4Fe-4S, heme, iron, iron-sulfur, membrane,
metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus}
SCOP: d.58.1.5 d.58.36.2 d.134.1.1
Length = 366
Score = 34.6 bits (79), Expect = 0.011
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 47 FRGEHALRRYPNGEERCIACKLCEAI--CPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
G H PN E C++ + CP A+ + + +D+ KC+
Sbjct: 192 IVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKPD---------MKNKTIKVDVEKCM 242
Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127
YCG C CP + + N A
Sbjct: 243 YCGNCYTMCPGMPLFDPENDGAA 265
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur;
1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB:
1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A
1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A
1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Length = 106
Score = 34.3 bits (78), Expect = 0.012
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 13/62 (20%)
Query: 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
+ CI CK C +CP I +CI C LC+ CP A
Sbjct: 5 TDNCIKCKYTDCVEVCPVDCFYEGPN-----------FLVIHPDECIDCALCEPECPAQA 53
Query: 118 IV 119
I
Sbjct: 54 IF 55
Score = 25.8 bits (56), Expect = 4.9
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 102 KCIYC--GLCQEACPVDAIVEGPNF 124
CI C C E CPVD EGPNF
Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S,
iron-sulfur, metal-binding, oxidoreductase; HET: HCN;
1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2
d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 33.5 bits (76), Expect = 0.023
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVD 116
+C+ C C C T +G D D C+ CG C ACPV
Sbjct: 144 RTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVA 203
Query: 117 AIVEGPNFEFA 127
A+ E + +
Sbjct: 204 ALSEKSHMDRV 214
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi}
Length = 607
Score = 33.5 bits (76), Expect = 0.023
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 60 EERC----IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
++C LCE +CP G + I C CG+C CP
Sbjct: 26 YDKCNPDKCGHFLCERVCPV----NRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 81
Query: 116 DAI 118
+AI
Sbjct: 82 NAI 84
Score = 31.1 bits (70), Expect = 0.14
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 60 EERCIACKLCEAICPAQAITIESGP 84
E C C +C CP AI+I + P
Sbjct: 66 EASCTGCGICVHKCPFNAISIVNLP 90
>2v4j_A Sulfite reductase, dissimilatory-type subunit alpha; dissimilatory
sulfite reductase, complex, siroheme, oxidoreductase;
HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5
d.58.36.2 d.134.1.1
Length = 437
Score = 32.2 bits (73), Expect = 0.051
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 15/72 (20%)
Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
G H+ R + + CP++ + + + ID +C+ C
Sbjct: 263 AGAHSGRDWG----KFDIEAEVVNRCPSKCMKWDGS-----------KLSIDNKECVRCM 307
Query: 108 LCQEACPVDAIV 119
C P +
Sbjct: 308 HCINTMPRALHI 319
>2v4j_B Sulfite reductase, dissimilatory-type subunit beta; dissimilatory
sulfite reductase, complex, siroheme, oxidoreductase;
HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5
d.58.36.2 d.134.1.1
Length = 381
Score = 32.3 bits (73), Expect = 0.059
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 49 GEHALRRYPNGEERCIACKLCE--AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
G + R P + +LCE + + G ++ I +C+YC
Sbjct: 202 GVVGIHRKPPMIDHEWTDQLCEIPLAVASCPTAAVRPTKLEIGDKKVNTIAIKNERCMYC 261
Query: 107 GLCQEACPVDAIVEGPNFEFA 127
G C CP I +G
Sbjct: 262 GNCYTMCPALPISDGEGDGVV 282
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 31.1 bits (70), Expect = 0.11
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 28/64 (43%)
Query: 13 LKEFVGAF---FLC-------------------------LRYFFKAKTTINYPFEKGSTS 44
L + F +L ++ + A+ PF+K S S
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 45 PRFR 48
FR
Sbjct: 144 ALFR 147
Score = 29.5 bits (66), Expect = 0.37
Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 43/109 (39%)
Query: 76 QAITI--ESGPRCHDGTRRT-----VRYD-ID--------M--IKCIYCGLCQEACPVDA 117
+AIT+ G RC++ T + D ++ M I L QE V
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQ--VQD 351
Query: 118 IVEGPNFEFATETRQELYYDKERL---LNNGDRWESEIVRNIVTDSPYR 163
V +T L K ++ L NG +N+V P +
Sbjct: 352 YVN--------KTNSHLPAGK-QVEISLVNGA-------KNLVVSGPPQ 384
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
iron-sulfur, metal-binding, molybdopterin; HET: MGD;
2.4A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Length = 195
Score = 30.7 bits (68), Expect = 0.19
Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK 102
P +R GE + + C + P + +D K
Sbjct: 30 PPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKK 89
Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATET 130
CI CG C ACP DA P + T
Sbjct: 90 CIACGACIAACPYDARYLHPAGYVSKCT 117
Score = 29.9 bits (66), Expect = 0.27
Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 61 ERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC--GLCQEAC 113
C+ C C C + G + + +C++C C C
Sbjct: 11 SLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVC 70
Query: 114 PVDAI 118
P A
Sbjct: 71 PTGAS 75
Score = 28.7 bits (63), Expect = 0.66
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 98 IDMIKCIYCGLCQEACPV 115
ID+ C+ C C AC +
Sbjct: 8 IDLSLCVGCAACAVACKM 25
Score = 25.3 bits (54), Expect = 6.7
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
++CIAC C A CP A + + ++ C E CP
Sbjct: 88 KKCIACGACIAACPYDARYLHPAGY-----VSKCTFCAHRLEKGKVPACVETCPTYCRTF 142
Query: 121 GP 122
G
Sbjct: 143 GD 144
>3c7b_A Sulfite reductase, dissimilatory-type subunit alpha; alpha/beta
fold, 4Fe-4S, heme, iron, iron-sulfur, membrane,
metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus}
SCOP: d.58.1.5 d.58.36.2 d.134.1.1
Length = 417
Score = 28.7 bits (64), Expect = 0.60
Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 11/60 (18%)
Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
+CP AI + ID +C+ C C P
Sbjct: 256 MDIENEVVKLCPTGAIKWDGK-----------ELTIDNRECVRCMHCINKMPKALKPGDE 304
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 28.5 bits (62), Expect = 0.71
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 63 CIACKLCEAICPAQAIT 79
C+ CK C+ P+Q I
Sbjct: 553 CVHCKTCDIKDPSQNIN 569
Score = 25.0 bits (53), Expect = 7.4
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 18/66 (27%)
Query: 69 CEAICPAQA---ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV------ 119
+ CPA + +E G R I+ C++C C P I
Sbjct: 524 EQRFCPAGVYEFVPLEQGDG--------FRLQINAQNCVHCKTCDIKDPSQNINWVVPEG 575
Query: 120 -EGPNF 124
GP +
Sbjct: 576 GGGPAY 581
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP;
alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
{Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A*
3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Length = 418
Score = 28.4 bits (63), Expect = 0.74
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 1/66 (1%)
Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
+ + A K + + ++ P ID +C+ C C P
Sbjct: 241 DDIKVDQEAVKEYASWMDIENEVVKLCPT-GAIKWDGKELTIDNRECVRCMHCINKMPKA 299
Query: 117 AIVEGP 122
Sbjct: 300 LKPGDE 305
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.8 bits (59), Expect = 2.6
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 10/43 (23%)
Query: 84 PRCHDGTRRT-VRYDI---DMIKCIYCGLCQEACPVDAIVEGP 122
P C + D++ C CGL VD
Sbjct: 25 PEC--KVYPPKIVERFSEGDVV-CALCGLVLSDKLVD---TRS 61
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, FMN, FAD, iron,
3Fe-4S, 4Fe-4S, zymogen; HET: OMT FMN AKG FAD; 9.50A
{Azospirillum brasilense}
Length = 456
Score = 26.6 bits (58), Expect = 2.8
Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 2/19 (10%)
Query: 103 CIYCG--LCQEACPVDAIV 119
C CG CQ CPV +
Sbjct: 22 CSQCGVPFCQVHCPVSNNI 40
Score = 25.5 bits (55), Expect = 5.9
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 21/78 (26%)
Query: 61 ERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIK------------CI 104
RC C C+ CP P T R + ++ + C
Sbjct: 20 NRCSQCGVPFCQVHCPVSNNI----PDWLKLTSEG-RLEEAYEVSQATNNFPEICGRICP 74
Query: 105 YCGLCQEACPVDAIVEGP 122
LC+ C ++ G
Sbjct: 75 QDRLCEGNCVIEQSTHGA 92
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
Length = 897
Score = 26.4 bits (57), Expect = 3.1
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 58 NGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GL 108
ERC C+ +CP G CH D KC+ C G
Sbjct: 177 QFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGR 236
Query: 109 CQEACP 114
C E CP
Sbjct: 237 CVETCP 242
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Length = 121
Score = 25.7 bits (56), Expect = 4.8
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
CKL + P P+ + + + + P D + G NF
Sbjct: 46 CKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVEIFD---PDD-LYSGVNF 100
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1
d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Length = 241
Score = 25.6 bits (55), Expect = 6.0
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 17/80 (21%)
Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPR------------CHDGTRRTVRYDIDMI 101
+ +RCI C C A C + + + HD Y++
Sbjct: 142 AQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGD 201
Query: 102 K-----CIYCGLCQEACPVD 116
C+ C + CP +
Sbjct: 202 DDGVFGCMTLLACHDVCPKN 221
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_1* 3iam_1* 3ias_1*
Length = 438
Score = 25.5 bits (55), Expect = 6.5
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG-LCQEACP 114
E C C C + + + G + V ++ I C A
Sbjct: 350 HESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADA 405
>1igr_A Protein (insulin-like growth factor receptor 1); hormone receptor,
insulin receptor family; HET: NAG FUC BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 25.0 bits (54), Expect = 8.1
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 62 RCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEA 112
RC C+ +CP+ + E+ CH + + C+ C G+C A
Sbjct: 174 RCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPA 233
Query: 113 CPVD 116
CP +
Sbjct: 234 CPPN 237
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.328 0.143 0.465
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,525,325
Number of extensions: 70433
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 116
Length of query: 163
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 78
Effective length of database: 3,632,490
Effective search space: 283334220
Effective search space used: 283334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.7 bits)