BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I
[Candidatus Liberibacter asiaticus str. psy62]
         (163 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 163

 Score =  337 bits (864), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE
Sbjct: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR
Sbjct: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163


>gi|254780416|ref|YP_003064829.1| putative ferredoxin protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 113

 Score = 29.6 bits (65), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 13/60 (21%)

Query: 61  ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E CI CK   C  +CP            ++G        I   +CI CG+C+  CPVDAI
Sbjct: 7   ENCILCKHTDCVEVCPVDCF--------YEGENFLA---IHPDECIDCGVCEPECPVDAI 55



 Score = 29.6 bits (65), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
          + GE+ L  +P+    CI C +CE  CP  AI  ++ P
Sbjct: 27 YEGENFLAIHPD---ECIDCGVCEPECPVDAIKPDTEP 61



 Score = 24.6 bits (52), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 103 CIYCGL--CQEACPVDAIVEGPNF 124
           CI C    C E CPVD   EG NF
Sbjct: 9   CILCKHTDCVEVCPVDCFYEGENF 32


>gi|254781044|ref|YP_003065457.1| succinate dehydrogenase iron-sulfur subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 259

 Score = 23.1 bits (48), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSP--RFRGEHALRRYPNGEERCIACKLCEAI 72
             +    + + +F+    +I    +  S  P       H  R+  +G   C+ C  C   
Sbjct: 120 SVIKDLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQKIDGLYECVMCACCSTS 179

Query: 73  CPA 75
           CP+
Sbjct: 180 CPS 182


>gi|254781040|ref|YP_003065453.1| hypothetical protein CLIBASIA_04710 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 143

 Score = 22.3 bits (46), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 66  CKLCEAICPAQAITIESGPR 85
           C +C   CP   + I++ PR
Sbjct: 88  CAVCSMPCPVSLMAIKANPR 107


>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 21.6 bits (44), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           DG  RTV    D  K ++  +    C +DA++E
Sbjct: 84  DGYPRTV----DQAKSLHAFISNMDCAIDAVIE 112


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.143    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,123
Number of Sequences: 1233
Number of extensions: 3972
Number of successful extensions: 14
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 163
length of database: 328,796
effective HSP length: 67
effective length of query: 96
effective length of database: 246,185
effective search space: 23633760
effective search space used: 23633760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 35 (18.1 bits)