HHsearch alignment for GI: 254780862 and conserved domain: CHL00016
>CHL00016 ndhG NADH dehydrogenase subunit 6.
Probab=100.00 E-value=0 Score=279.34 Aligned_cols=165 Identities=27% Similarity=0.367 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 79999999999999999999972428999999999999999999980870799999999999999999999998173111
Q gi|254780862|r 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 (199)
Q Consensus 3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~ 82 (199)
T Consensus 7 ~~~ilF~~~a~~~i~~al~vv~~~n~V~sal~Lv~~f~~vAgly~lL~A~Fla~~QIlVYaGAI~VLflFvIMll~~~~~ 86 (177)
T CHL00016 7 IHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLLYILLNSDFVAAAQLLIYVGAINVLIIFAVMFMNGSEY 86 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999999999998840103644999999999999999999995358999999999999999999999998261644
Q ss_pred HHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHH--CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 212332210-0-12468999999999999977662--1566--6554344611389999999875269999999999999
Q gi|254780862|r 83 VAEPRKKRG-F-LGSFFIGILAAELIVCASNFMVF--SAEG--ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156 (199)
Q Consensus 83 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLva 156 (199)
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~lpFEl~s~lLLvA 166 (177)
T CHL00016 87 SKDFNLWTVGDGITSLVCTSLFFSLITTILDTSWYGIIWTTRSNQIIEQDLISNVQQIGIHLSTDFFLPFELISIILLVA 166 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30223677888999999999999999999964020113456664333333467799999999861799999999999999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999750
Q gi|254780862|r 157 MIGAIVLMLRH 167 (199)
Q Consensus 157 miGAi~La~~~ 167 (199)
T Consensus 167 mIGAIvLarre 177 (177)
T CHL00016 167 LIGAITIARQE 177 (177)
T ss_pred HHHHHHHHCCC
T ss_conf 99896420369