HHsearch alignment for GI: 254780862 and conserved domain: CHL00016

>CHL00016 ndhG NADH dehydrogenase subunit 6.
Probab=100.00  E-value=0  Score=279.34  Aligned_cols=165  Identities=27%  Similarity=0.367  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             79999999999999999999972428999999999999999999980870799999999999999999999998173111
Q gi|254780862|r    3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE   82 (199)
Q Consensus         3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~   82 (199)
T Consensus         7 ~~~ilF~~~a~~~i~~al~vv~~~n~V~sal~Lv~~f~~vAgly~lL~A~Fla~~QIlVYaGAI~VLflFvIMll~~~~~   86 (177)
T CHL00016          7 IHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLLYILLNSDFVAAAQLLIYVGAINVLIIFAVMFMNGSEY   86 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99999999999999998840103644999999999999999999995358999999999999999999999998261644


Q ss_pred             HHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHH--CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             212332210-0-12468999999999999977662--1566--6554344611389999999875269999999999999
Q gi|254780862|r   83 VAEPRKKRG-F-LGSFFIGILAAELIVCASNFMVF--SAEG--ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS  156 (199)
Q Consensus        83 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLva  156 (199)
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~lpFEl~s~lLLvA  166 (177)
T CHL00016         87 SKDFNLWTVGDGITSLVCTSLFFSLITTILDTSWYGIIWTTRSNQIIEQDLISNVQQIGIHLSTDFFLPFELISIILLVA  166 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30223677888999999999999999999964020113456664333333467799999999861799999999999999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999750
Q gi|254780862|r  157 MIGAIVLMLRH  167 (199)
Q Consensus       157 miGAi~La~~~  167 (199)
T Consensus       167 mIGAIvLarre  177 (177)
T CHL00016        167 LIGAITIARQE  177 (177)
T ss_pred             HHHHHHHHCCC
T ss_conf             99896420369