HHsearch alignment for GI: 254780862 and conserved domain: COG0839
>COG0839 NuoJ NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion].
Probab=100.00 E-value=4.2e-45 Score=264.08 Aligned_cols=166 Identities=36% Similarity=0.647 Sum_probs=139.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 95799999999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199)
Q Consensus 1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199)
T Consensus 1 ~~~~~~~F~~fa~~~i~~a~~VV~~kn~vys~l~L~~~~l~iA~~~~ll~aefl~v~~v~VYvGAV~vl~~fvvm~~~~~ 80 (166)
T COG0839 1 MMIETLAFYLFAVLAIAFALGVVLAKNPVYSALYLALTLLSIAALFFLLGAEFLGVVQVLVYVGAVMVLFLFVVMMLNVD 80 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 91899999999999999860045533769999999999999999999826399999999999989999999999983555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11212332210012468999999999999977662156665543446113899999998752699999999999999999
Q gi|254780862|r 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 (199)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGA 160 (199)
T Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~lg~~Lft~Yl~pfe~asilLL~amVgA 158 (166)
T COG0839 81 GAEVREEGLRGKPLAALVGLVLLALLIISVAVVSGAFVPPS-N-PAAIGNIKALGSVLFTDYLLPFELASVLLLVAMVGA 158 (166)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 06641337725626999999999999999999845667855-5-555435999999994606899999999999999989
Q ss_pred HHHHHHCC
Q ss_conf 99997505
Q gi|254780862|r 161 IVLMLRHR 168 (199)
Q Consensus 161 i~La~~~~ 168 (199)
T Consensus 159 I~Larr~~ 166 (166)
T COG0839 159 IVLARRER 166 (166)
T ss_pred HHHHCCCC
T ss_conf 43321379