HHsearch alignment for GI: 254780862 and conserved domain: MTH00057
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional.
Probab=100.00 E-value=0 Score=341.08 Aligned_cols=180 Identities=41% Similarity=0.607 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999999999999972428999999999999999999980870799999999999999999999998173111212
Q gi|254780862|r 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 (199)
Q Consensus 6 i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~ 85 (199)
T Consensus 3 ~lF~i~a~~~i~sal~vv~~kNpVhsal~Li~~f~~~A~l~~lL~AeFLa~vqIiVYvGAI~VLfLFVIMmln~~~~~~~ 82 (184)
T MTH00057 3 GLFYLFALGVIISGIMVISALNPVHSVLWLIVAFLSASALFILLEVEFIAFIFLIVYVGAIAILFLFVIMMLNLTDLEGG 82 (184)
T ss_pred CHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
T ss_conf 68999999999997840002764999999999999999999994759999999999998999999999997361476640
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 332210012468999999999-9999776621566655434461138999999987526999999999999999999999
Q gi|254780862|r 86 PRKKRGFLGSFFIGILAAELI-VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 (199)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La 164 (199)
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~iG~~Lft~Y~~pFel~silLLvAmIGAIvLt 162 (184)
T MTH00057 83 GDMSNYLPAGFIIGVVFLFEILIFQSTFPSYGIRYVRWNWIEKEPNIEVLGRVLYTDYYYLFILASFILLVAMIGAIVLT 162 (184)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12135778999999999999999999741255544553225788759999999999889999999999999999999751
Q ss_pred HHCCCCCCCCCHHHHHHCCHH
Q ss_conf 750588754689999500843
Q gi|254780862|r 165 LRHRRDIKRQDISKQLESNPD 185 (199)
Q Consensus 165 ~~~~~~~krq~~~~q~~~~~~ 185 (199)
T Consensus 163 ~~~~~~~k~Q~~~~Q~~r~~~ 183 (184)
T MTH00057 163 HDLRIEIKRQDIFIQTSRQLW 183 (184)
T ss_pred CCCCCCCCCCCHHHHHHHHHH
T ss_conf 125788766689999878850