HHsearch alignment for GI: 254780862 and conserved domain: MTH00057

>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional.
Probab=100.00  E-value=0  Score=341.08  Aligned_cols=180  Identities=41%  Similarity=0.607  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99999999999999999972428999999999999999999980870799999999999999999999998173111212
Q gi|254780862|r    6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE   85 (199)
Q Consensus         6 i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~   85 (199)
T Consensus         3 ~lF~i~a~~~i~sal~vv~~kNpVhsal~Li~~f~~~A~l~~lL~AeFLa~vqIiVYvGAI~VLfLFVIMmln~~~~~~~   82 (184)
T MTH00057          3 GLFYLFALGVIISGIMVISALNPVHSVLWLIVAFLSASALFILLEVEFIAFIFLIVYVGAIAILFLFVIMMLNLTDLEGG   82 (184)
T ss_pred             CHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
T ss_conf             68999999999997840002764999999999999999999994759999999999998999999999997361476640


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             332210012468999999999-9999776621566655434461138999999987526999999999999999999999
Q gi|254780862|r   86 PRKKRGFLGSFFIGILAAELI-VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM  164 (199)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La  164 (199)
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~iG~~Lft~Y~~pFel~silLLvAmIGAIvLt  162 (184)
T MTH00057         83 GDMSNYLPAGFIIGVVFLFEILIFQSTFPSYGIRYVRWNWIEKEPNIEVLGRVLYTDYYYLFILASFILLVAMIGAIVLT  162 (184)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12135778999999999999999999741255544553225788759999999999889999999999999999999751


Q ss_pred             HHCCCCCCCCCHHHHHHCCHH
Q ss_conf             750588754689999500843
Q gi|254780862|r  165 LRHRRDIKRQDISKQLESNPD  185 (199)
Q Consensus       165 ~~~~~~~krq~~~~q~~~~~~  185 (199)
T Consensus       163 ~~~~~~~k~Q~~~~Q~~r~~~  183 (184)
T MTH00057        163 HDLRIEIKRQDIFIQTSRQLW  183 (184)
T ss_pred             CCCCCCCCCCCHHHHHHHHHH
T ss_conf             125788766689999878850