Query gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs 111 out of 1690
Neff 6.6
Searched_HMMs 13730
Date Wed Jun 1 10:54:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780862.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fd5a2 a.121.1.1 (A:77-180) P 54.8 4.2 0.00031 16.5 2.8 34 149-186 68-101 (104)
2 d2axta1 f.26.1.1 (A:10-344) Ph 21.4 18 0.0013 13.0 7.5 37 142-178 184-228 (335)
3 d2j8cm1 f.26.1.1 (M:1-303) M ( 18.8 21 0.0015 12.7 6.3 25 142-166 197-227 (303)
4 d1h2sb_ f.17.4.1 (B:) Sensory 4.3 85 0.0062 9.4 2.1 13 59-71 3-15 (60)
5 d1eysm_ f.26.1.1 (M:) M (mediu 3.6 1.1E+02 0.0077 8.9 9.7 34 133-166 187-226 (318)
6 d3dtua1 f.24.1.1 (A:14-551) Ba 3.2 1.2E+02 0.0089 8.6 4.3 38 8-45 276-313 (538)
7 d1q90d_ f.32.1.1 (D:) Subunit 3.0 1.3E+02 0.0096 8.4 6.8 24 53-76 78-105 (156)
8 d1hsta_ a.4.5.13 (A:) Histone 3.0 1.1E+02 0.0082 8.8 -0.4 18 127-144 20-37 (74)
9 d2isya1 a.4.5.24 (A:2-64) Iron 2.5 60 0.0044 10.2 -2.2 23 166-188 19-41 (63)
10 d2e2aa_ a.7.2.1 (A:) Enzyme II 2.5 1.6E+02 0.012 7.9 1.6 9 56-64 10-18 (104)
No 1
>d2fd5a2 a.121.1.1 (A:77-180) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=54.76 E-value=4.2 Score=16.53 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHH
Q ss_conf 99999999999999997505887546899995008431
Q gi|254780862|r 149 SGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDN 186 (199)
Q Consensus 149 ~sviLLvamiGAi~La~~~~~~~krq~~~~q~~~~~~~ 186 (199)
.++.++..|+||++|++--+ .++...++....++
T Consensus 68 ~A~~~la~mvGal~LARa~~----d~~ls~~iL~a~r~ 101 (104)
T d2fd5a2 68 VALADLVLMIGGLALARALG----PGELSDRVLRAAKQ 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_conf 89999999999999999809----89999999999998
No 2
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.42 E-value=18 Score=13.04 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHH--HCCCCCCCCCHHH
Q ss_conf 26999999999------9999999999997--5058875468999
Q gi|254780862|r 142 YAYPLEISGFI------LLLSMIGAIVLML--RHRRDIKRQDISK 178 (199)
Q Consensus 142 y~~~fel~svi------LLvamiGAi~La~--~~~~~~krq~~~~ 178 (199)
+.-||-..|+. |+-||=|+.+++- ||+++.|.++...
T Consensus 184 ~ynPFHml~Ia~~fG~aLl~AMHGatVls~l~~e~~e~~s~~~~~ 228 (335)
T d2axta1 184 LMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGY 228 (335)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHTBBCCSCSSSCSGGGC
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 028188776999987799999987787556677677757765677
No 3
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.82 E-value=21 Score=12.72 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=18.3
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHH
Q ss_conf 2699999999------999999999999975
Q gi|254780862|r 142 YAYPLEISGF------ILLLSMIGAIVLMLR 166 (199)
Q Consensus 142 y~~~fel~sv------iLLvamiGAi~La~~ 166 (199)
|.=||-..|+ -||-||=||.+|+--
T Consensus 197 ~yNPfHmlsIafl~gsaLl~AmHGatIla~~ 227 (303)
T d2j8cm1 197 FYNPFHGLSIAFLYGSALLFAMHGATILAVS 227 (303)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0276998888898775999986555765210
No 4
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=4.28 E-value=85 Score=9.41 Aligned_cols=13 Identities=38% Similarity=0.812 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780862|r 59 LVVYVGAVIVFFL 71 (199)
Q Consensus 59 IlVYvGAI~VLfl 71 (199)
+-+++||..|||=
T Consensus 3 vfifvgaltvlfg 15 (60)
T d1h2sb_ 3 VFIFVGALTVLFG 15 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHH
T ss_conf 9999727999874
No 5
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=3.58 E-value=1.1e+02 Score=8.89 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q ss_conf 9999998752699999999------999999999999975
Q gi|254780862|r 133 NIGKVLYTQYAYPLEISGF------ILLLSMIGAIVLMLR 166 (199)
Q Consensus 133 ~iG~~L~t~y~~~fel~sv------iLLvamiGAi~La~~ 166 (199)
+.+.....=|.=||-..|+ -||-||=||.+|+--
T Consensus 187 ~fs~~ygN~~YNPfHmlsIafl~gsaLl~AmHGatIla~~ 226 (318)
T d1eysm_ 187 AFSIRYGNLYYNPFHMLSIAFLYGSALLFAMHGATILSVS 226 (318)
T ss_dssp HHHHHTTCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_conf 9998835042178999999999887999987555630211
No 6
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.19 E-value=1.2e+02 Score=8.56 Aligned_cols=38 Identities=18% Similarity=0.481 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999997242899999999999999999
Q gi|254780862|r 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGL 45 (199)
Q Consensus 8 F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl 45 (199)
++++-...+.+.+....+|+|+++-.+.+.++.+++.+
T Consensus 276 i~ilPa~Gi~s~ii~~~s~k~lfg~~~~~~a~~~i~~l 313 (538)
T d3dtua1 276 IIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVL 313 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 01013789999999860476554708999999999998
No 7
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.00 E-value=1.3e+02 Score=8.38 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=12.9
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf 7999999999----99999999999998
Q gi|254780862|r 53 FVAMITLVVY----VGAVIVFFLFIIMM 76 (199)
Q Consensus 53 Fla~~qIlVY----vGAI~VLflFvIMl 76 (199)
|+..-||+-| .|++..+.+....+
T Consensus 78 FL~~yaiLR~iP~kl~GVi~~~~~i~~L 105 (156)
T d1q90d_ 78 FYPVFQILRVVPNKLLGVLLMAAVPAGL 105 (156)
T ss_dssp GHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 2899999980782888899999999999
No 8
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.99 E-value=1.1e+02 Score=8.75 Aligned_cols=18 Identities=22% Similarity=0.421 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 611389999999875269
Q gi|254780862|r 127 KGNNVENIGKVLYTQYAY 144 (199)
Q Consensus 127 ~~~~~~~iG~~L~t~y~~ 144 (199)
.+++..+|-..+-.+|..
T Consensus 20 ~GsS~~AI~kyI~~~y~~ 37 (74)
T d1hsta_ 20 GGSSRQSIQKYIKSHYKV 37 (74)
T ss_dssp SCEEHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHCCC
T ss_conf 996899999999987888
No 9
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.53 E-value=60 Score=10.25 Aligned_cols=23 Identities=13% Similarity=0.123 Sum_probs=9.3
Q ss_pred HCCCCCCCCCHHHHHHCCHHHCE
Q ss_conf 50588754689999500843156
Q gi|254780862|r 166 RHRRDIKRQDISKQLESNPDNSI 188 (199)
Q Consensus 166 ~~~~~~krq~~~~q~~~~~~~~i 188 (199)
+++..++..|+.+.....+....
T Consensus 19 ~~~~~v~~~~iA~~L~vs~~SVt 41 (63)
T d2isya1 19 EEGVTPLRARIAERLDQSGPTVS 41 (63)
T ss_dssp HTTCCCCHHHHHHHHTCCHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCCHHHH
T ss_conf 55897709999999689944399
No 10
>d2e2aa_ a.7.2.1 (A:) Enzyme IIa from lactose specific PTS, IIa-lac {Lactococcus lactis [TaxId: 1358]}
Probab=2.52 E-value=1.6e+02 Score=7.89 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780862|r 56 MITLVVYVG 64 (199)
Q Consensus 56 ~~qIlVYvG 64 (199)
.+||+.|+|
T Consensus 10 ~f~iI~~aG 18 (104)
T d2e2aa_ 10 GFEIVAYAG 18 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999988
Done!