RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] (199 letters) >gnl|CDD|180642 PRK06638, PRK06638, NADH:ubiquinone oxidoreductase subunit J; Provisional. Length = 198 Score = 166 bits (422), Expect = 4e-42 Identities = 74/199 (37%), Positives = 124/199 (62%), Gaps = 3/199 (1%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M +++ FY+ + +A++++ VVT RNP++S LI F++ AGL+ LLGAEF+ ++ ++ Sbjct: 1 MTGEAIAFYILALLAVLAALGVVTSRNPVHSALFLILTFLSIAGLYFLLGAEFLGVVQII 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIG--ILAAELIVCASNFMVFSAE 118 VYVGAV+V FLF++MMLD+D E + + G IG IL L++ ++ ++ Sbjct: 61 VYVGAVMVLFLFVVMMLDVDFSERE-QLREWLPGGVLIGLVILLGLLLLLIVGAIIAASG 119 Query: 119 GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISK 178 + N + IG +L+T Y P E++ +LL++M+GAIVL R R +KRQD+ Sbjct: 120 VNAQGIAAGEGNTKAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRERARVKRQDVPA 179 Query: 179 QLESNPDNSIVMVKVKSGK 197 QL ++++ +VKV+ GK Sbjct: 180 QLPDGREDALSVVKVEEGK 198 >gnl|CDD|180562 PRK06433, PRK06433, NADH dehydrogenase subunit J; Provisional. Length = 88 Score = 61.5 bits (150), Expect = 1e-10 Identities = 26/85 (30%), Positives = 48/85 (56%) Query: 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60 M+ +++ F LF+ + + S VV R+ +S L A + A L+++L AEF+A + ++ Sbjct: 1 MMYETIAFALFALVTVAFSLGVVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVL 60 Query: 61 VYVGAVIVFFLFIIMMLDIDIEVAE 85 VYVGAV++ F +M+ + Sbjct: 61 VYVGAVLILITFAVMLTKGEEGEES 85 >gnl|CDD|183161 PRK11492, hyfE, hydrogenase 4 membrane subunit; Provisional. Length = 216 Score = 29.9 bits (68), Expect = 0.49 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 20/109 (18%) Query: 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEF----------VAMITLVVYVGA 65 I++S LV++VR+ S + +FL L F A IT V+ V Sbjct: 15 ILTSLLVISVRSYRLSAGFYALQSLVLVSIFLTLSCLFAAEELLIWSITAFITKVLLVPL 74 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMV 114 ++ + L +IE + + IL A LIV F+V Sbjct: 75 IM---TYAARKLGDNIEE-------EPVFGPAMSILLAALIVLLCAFVV 113 >gnl|CDD|184993 PRK15033, PRK15033, tricarballylate utilization protein B; Provisional. Length = 389 Score = 29.6 bits (67), Expect = 0.57 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Query: 33 FSLIFAFVNAAGLFLLLGAEFVAM-ITLVVYVGAVIVFFL 71 F + +A+GL LL G + AM + L +++G V+ FL Sbjct: 315 FIALLFLTSASGLALLAGRDTSAMALLLALHLGVVMALFL 354 >gnl|CDD|179608 PRK03612, PRK03612, spermidine synthase; Provisional. Length = 521 Score = 28.7 bits (65), Expect = 0.93 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 34 SLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLF 72 L F F+ L L+ A + L+ A++ +LF Sbjct: 162 GLAFPFLLLPRLGLIRTAALTGSLNLLA---ALVFLWLF 197 >gnl|CDD|148040 pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins. Length = 146 Score = 28.4 bits (64), Expect = 1.2 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 7/121 (5%) Query: 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGA 65 L + ++ + L+ + + + A + AG+FL L F A Sbjct: 27 TGLILTGLLVLLYALLL------LRKIERVGAALLILAGVFLALVGIFPEGTGYPHLFVA 80 Query: 66 VIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFF-IGILAAELIVCASNFMVFSAEGELSRL 124 ++ F L I +L + I + + + F + + + L + A EL + Sbjct: 81 LLFFLLGFIAVLILGIGLLLSGRFKKFGILIGALALASLFLFIGGLKTWPGLAIPELEGI 140 Query: 125 V 125 V Sbjct: 141 V 141 >gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional. Length = 325 Score = 27.0 bits (60), Expect = 3.1 Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVY 62 + SL + + + L+V +R ++ F+ A LF +GA+F+ M L Y Sbjct: 233 LLSLLGSIIAIGGFSLAVLLVVLRLTFGPQWAAEGVFMLFAVLFTFIGAQFIGMGLLGEY 292 Query: 63 VG 64 +G Sbjct: 293 IG 294 >gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 761 Score = 26.8 bits (60), Expect = 3.5 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 13 FMAIISSFLVVTVRNPIYSVFSL-IFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFL 71 + + + VT R+ + ++ SL + F A +F+L GA +AM ++ +VI+ L Sbjct: 594 LIIVAGALATVTTRSRLTAIVSLGVQGF-AVALIFILFGAPDLAMTQFLIETLSVILLVL 652 >gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional. Length = 1092 Score = 26.9 bits (60), Expect = 3.7 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%) Query: 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIF------AFVNAAGLFLLLGAEFVAMIT 58 +L + + F II + VR P F + + + AA LL M Sbjct: 189 ALLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSH 248 Query: 59 LVVYVGAVIVFFLFIIMML 77 + +I+ I+ M+ Sbjct: 249 MPWLPFLLILLPANIMTMV 267 >gnl|CDD|180520 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed. Length = 565 Score = 25.5 bits (57), Expect = 8.3 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 18/57 (31%) Query: 157 MIGAIVLMLRHRRDIKRQDIS---KQLESNP---------DNSIVMVKVKS--GKGI 199 + A+VL + D++++ IS KQLE +P SIV V KG Sbjct: 424 EVEAVVLKV----DVEKERISLGIKQLEEDPFEEFAKKHKKGSIVTGTVTEVKDKGA 476 >gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. Length = 473 Score = 25.8 bits (57), Expect = 8.8 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%) Query: 31 SVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 SV +F F+ L G A I + + +I FLFII Sbjct: 134 SVLLWVFTFLV------LRGVRQAAFINTITTIAKLIPLFLFII 171 >gnl|CDD|181860 PRK09440, avtA, valine--pyruvate transaminase; Provisional. Length = 416 Score = 25.6 bits (57), Expect = 9.7 Identities = 8/12 (66%), Positives = 9/12 (75%) Query: 4 QSLFFYLFSFMA 15 QS FFYLF+ A Sbjct: 107 QSAFFYLFNLFA 118 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.333 0.147 0.408 Gapped Lambda K H 0.267 0.0734 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,248,675 Number of extensions: 216602 Number of successful extensions: 1033 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1013 Number of HSP's successfully gapped: 162 Length of query: 199 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 110 Effective length of database: 4,071,361 Effective search space: 447849710 Effective search space used: 447849710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 55 (25.0 bits)