BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J
[Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 199

 Score =  390 bits (1001), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60
           MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV
Sbjct: 1   MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLV 60

Query: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120
           VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE
Sbjct: 61  VYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGE 120

Query: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180
           LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL
Sbjct: 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQL 180

Query: 181 ESNPDNSIVMVKVKSGKGI 199
           ESNPDNSIVMVKVKSGKGI
Sbjct: 181 ESNPDNSIVMVKVKSGKGI 199


>gi|254780948|ref|YP_003065361.1| DNA repair protein RecO [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 240

 Score = 23.1 bits (48), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 10/48 (20%), Positives = 24/48 (50%)

Query: 9   YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAM 56
           +L+   +I+  F  +  R P   ++ ++  F+N   +  ++G  FV +
Sbjct: 87  FLYGLQSIVPLFRFLPEREPCLELYDMLNIFLNCHKIPSVIGKIFVQI 134


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
          regulatory protein [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 495

 Score = 22.7 bits (47), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 25 VRNPIYSVFSLIFAFVNAAGLFL 47
           +NPI+ ++SLI   V AA L L
Sbjct: 67 TQNPIFPMWSLITLAVYAANLSL 89


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.147    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,147
Number of Sequences: 1233
Number of extensions: 4346
Number of successful extensions: 19
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 7
length of query: 199
length of database: 328,796
effective HSP length: 70
effective length of query: 129
effective length of database: 242,486
effective search space: 31280694
effective search space used: 31280694
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 36 (18.5 bits)