Query gi|254780863|ref|YP_003065276.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 29 23:40:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780863.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0713 NuoK NADH:ubiquinone o 96.1 0.0049 1.3E-07 34.4 3.1 27 3-30 2-28 (100)
2 PRK05715 NADH dehydrogenase su 94.2 0.031 7.9E-07 30.7 2.3 23 3-25 1-23 (99)
3 CHL00015 ndhE NADH dehydrogena 93.4 0.051 1.3E-06 29.7 2.2 23 3-25 1-23 (101)
4 MTH00192 ND4L NADH dehydrogena 92.0 0.053 1.4E-06 29.6 0.8 22 5-26 2-23 (99)
5 MTH00180 ND4L NADH dehydrogena 89.8 0.21 5.3E-06 26.9 2.1 24 5-28 2-25 (99)
6 MTH00001 ND4L NADH dehydrogena 82.1 0.35 9E-06 25.8 -0.1 22 7-28 2-23 (97)
7 PRK01470 tatA twin arginine tr 41.8 22 0.00057 17.5 2.5 22 1-22 1-22 (53)
8 COG4035 Predicted membrane pro 28.2 42 0.0011 16.2 2.1 17 5-21 5-22 (108)
9 TIGR02538 type_IV_pilB type IV 26.7 38 0.00097 16.4 1.6 19 1-19 440-458 (577)
10 pfam11667 DUF3267 Protein of u 24.6 68 0.0017 15.2 3.4 29 5-33 72-100 (107)
11 PRK00191 tatA twin arginine tr 22.9 72 0.0018 15.1 2.5 20 1-20 1-21 (107)
12 TIGR02362 dhaK1b probable dihy 20.9 13 0.00034 18.5 -1.6 21 9-29 83-103 (328)
No 1
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=96.12 E-value=0.0049 Score=34.39 Aligned_cols=27 Identities=44% Similarity=0.776 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 2066799999999999163099999998
Q gi|254780863|r 3 IGLSHYLIVSAVIFIIGSSGVFLIVKVL 30 (33)
Q Consensus 3 iglshylivsavifiigssgvflivkvl 30 (33)
+.++||+++|++.|.||..|++. -|.+
T Consensus 2 i~l~~~l~laa~LF~IGl~Gv~~-rrN~ 28 (100)
T COG0713 2 IPLQHYLILAALLFTIGLYGLLT-RRNL 28 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 31878999999999998789999-9889
No 2
>PRK05715 NADH dehydrogenase subunit K; Validated
Probab=94.23 E-value=0.031 Score=30.70 Aligned_cols=23 Identities=57% Similarity=1.048 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 20667999999999991630999
Q gi|254780863|r 3 IGLSHYLIVSAVIFIIGSSGVFL 25 (33)
Q Consensus 3 iglshylivsavifiigssgvfl 25 (33)
|+++|||++|+.+|.||--|+..
T Consensus 1 i~l~~yL~ls~~LF~iGl~Gvl~ 23 (99)
T PRK05715 1 IPLQHYLILAAILFCIGLVGLFL 23 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95788999999999999999999
No 3
>CHL00015 ndhE NADH dehydrogenase subunit 4L
Probab=93.43 E-value=0.051 Score=29.69 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 20667999999999991630999
Q gi|254780863|r 3 IGLSHYLIVSAVIFIIGSSGVFL 25 (33)
Q Consensus 3 iglshylivsavifiigssgvfl 25 (33)
+.++|||++|+..|.||--|+..
T Consensus 1 m~l~~yL~ls~~LF~iGl~Gvl~ 23 (101)
T CHL00015 1 MMLEHVLVLSAYLFSIGIYGLIT 23 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95899999999999999899987
No 4
>MTH00192 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=92.03 E-value=0.053 Score=29.61 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 6679999999999916309999
Q gi|254780863|r 5 LSHYLIVSAVIFIIGSSGVFLI 26 (33)
Q Consensus 5 lshylivsavifiigssgvfli 26 (33)
-+|||++++..|.+|-.|+|+-
T Consensus 2 ~t~yL~~~~iLF~iGv~GI~lN 23 (99)
T MTH00192 2 TTGYLLVSIILFTTGVSGIIIN 23 (99)
T ss_pred CCHHHHHHHHHHHHHHHHEEEC
T ss_conf 5226899999999987422545
No 5
>MTH00180 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=89.80 E-value=0.21 Score=26.87 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 667999999999991630999999
Q gi|254780863|r 5 LSHYLIVSAVIFIIGSSGVFLIVK 28 (33)
Q Consensus 5 lshylivsavifiigssgvflivk 28 (33)
..||+++|+.+|.+|-.|+|+--|
T Consensus 2 ~~~yl~~s~~LF~iG~~Gi~lnRk 25 (99)
T MTH00180 2 YYEYLTVGIILFILGVLGIVLNRS 25 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 298999999999998888750323
No 6
>MTH00001 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=82.05 E-value=0.35 Score=25.80 Aligned_cols=22 Identities=41% Similarity=0.686 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 7999999999991630999999
Q gi|254780863|r 7 HYLIVSAVIFIIGSSGVFLIVK 28 (33)
Q Consensus 7 hylivsavifiigssgvflivk 28 (33)
+||++|++.|.+|-.|+|+--|
T Consensus 2 ~yL~~~~iLF~iGi~Gi~lNRk 23 (97)
T MTH00001 2 KYLIVIIVLLLLGSWGIILNRG 23 (97)
T ss_pred EEEHHHHHHHHHHHHHHEECCC
T ss_conf 0551999999998866302445
No 7
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=41.79 E-value=22 Score=17.48 Aligned_cols=22 Identities=41% Similarity=0.739 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 9520667999999999991630
Q gi|254780863|r 1 MNIGLSHYLIVSAVIFIIGSSG 22 (33)
Q Consensus 1 mniglshylivsavifiigssg 22 (33)
|.++..|.+||-+++++.=..|
T Consensus 1 mg~S~w~~~iV~~iv~~LFG~g 22 (53)
T PRK01470 1 MGMSFSHLLIVLLIIFVLFGAG 22 (53)
T ss_pred CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 9853999999999999998676
No 8
>COG4035 Predicted membrane protein [Function unknown]
Probab=28.22 E-value=42 Score=16.21 Aligned_cols=17 Identities=53% Similarity=0.641 Sum_probs=10.6
Q ss_pred HHHHHHHHHHH-HHHHCC
Q ss_conf 66799999999-999163
Q gi|254780863|r 5 LSHYLIVSAVI-FIIGSS 21 (33)
Q Consensus 5 lshylivsavi-fiigss 21 (33)
+-.--++.||+ ||+||-
T Consensus 5 l~E~~la~av~~Fi~Gs~ 22 (108)
T COG4035 5 LFELNLAGAVILFIIGSF 22 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 466999999999999878
No 9
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=26.73 E-value=38 Score=16.40 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 9520667999999999991
Q gi|254780863|r 1 MNIGLSHYLIVSAVIFIIG 19 (33)
Q Consensus 1 mniglshylivsavifiig 19 (33)
||+|..-|.|-|.|-.|+-
T Consensus 440 ~NMGiapFNIASSV~LI~A 458 (577)
T TIGR02538 440 VNMGIAPFNIASSVNLIMA 458 (577)
T ss_pred HHCCCHHHHHHHHHHHHHH
T ss_conf 7538413799999999999
No 10
>pfam11667 DUF3267 Protein of unknown function (DUF3267). This family of proteins has no known function.
Probab=24.59 E-value=68 Score=15.23 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 66799999999999163099999998619
Q gi|254780863|r 5 LSHYLIVSAVIFIIGSSGVFLIVKVLLRY 33 (33)
Q Consensus 5 lshylivsavifiigssgvflivkvllry 33 (33)
.+|+++.-+.+...||.|-|+.++.+++.
T Consensus 72 ~~~~~~~l~~ln~~g~~gD~~~~~~ll~~ 100 (107)
T pfam11667 72 YSPLFIFLAALNTGGCVGDFLYLLLLLKQ 100 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 62799999999987548999999999949
No 11
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=22.91 E-value=72 Score=15.13 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHHH-HHC
Q ss_conf 95206679999999999-916
Q gi|254780863|r 1 MNIGLSHYLIVSAVIFI-IGS 20 (33)
Q Consensus 1 mniglshylivsavifi-igs 20 (33)
|++|-.|.+|+..|+.+ .|+
T Consensus 1 MsLGpweiiiI~vvvllLFGa 21 (107)
T PRK00191 1 MSLGPWEIGIIVLLIIVLFGA 21 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHCC
T ss_conf 986379999999999999765
No 12
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit; InterPro: IPR012735 Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated 2.7.1.29 from EC. By contract, Escherichia coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex..
Probab=20.91 E-value=13 Score=18.52 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999916309999999
Q gi|254780863|r 9 LIVSAVIFIIGSSGVFLIVKV 29 (33)
Q Consensus 9 livsavifiigssgvflivkv 29 (33)
-|+.+.-|+--..|||+|+|-
T Consensus 83 ~il~~~r~~~~gkGVf~IiKN 103 (328)
T TIGR02362 83 DILEAIRQVDRGKGVFVIIKN 103 (328)
T ss_pred HHHHHHHHHHCCCEEEEEEEC
T ss_conf 999999875249768999717
Done!