Query         gi|254780863|ref|YP_003065276.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 17:37:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780863.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2shp_A SHP-2, SYP, SHPTP-2; t  19.1      25 0.00073   17.0  -0.2   15   17-31     67-81  (130)
  2 >2zxe_G FXYD10, phospholemman-  13.4   1E+02  0.0031   14.1   1.8   12    9-20     24-35  (74)
  3 >2jp3_A FXYD domain-containing  13.1 1.1E+02  0.0032   14.0   1.8   12    9-20     22-33  (67)
  4 >2jo1_A Phospholemman; FXYD1,   12.3 1.2E+02  0.0035   13.9   1.8   12    9-20     21-32  (72)
  5 >1jln_A STEP-like ptpase, prot  11.5      52  0.0015   15.5  -0.2   15   17-31     65-79  (130)
  6 >2cm2_A Tyrosine-protein phosp   9.0      98  0.0029   14.2   0.4   11   18-28     54-64  (133)
  7 >2p6x_A Tyrosine-protein phosp   8.8      78  0.0023   14.7  -0.2   14   17-30     63-76  (142)
  8 >2fhw_B Relaxin 3 (prorelaxin    7.1   2E+02  0.0061   12.7   1.8   14    9-22     13-26  (27)
  9 >2ekk_A UBA domain from E3 ubi   5.9 1.4E+02  0.0041   13.5  -0.0   15    1-15     17-31  (47)
 10 >2kjf_A Carnocyclin-A; circula   5.4 2.4E+02  0.0071   12.4   0.9   20   11-30     24-48  (60)

No 1  
>>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2 protein; HET: CAT; 2.00A {Homo sapiens} (A:216-282,A:463-525)
Probab=19.05  E-value=25  Score=16.97  Aligned_cols=15  Identities=40%  Similarity=1.085  Sum_probs=9.0

Q ss_pred             HHHCCCHHHHHHHHH
Q ss_conf             991630999999986
Q gi|254780863|r   17 IIGSSGVFLIVKVLL   31 (33)
Q Consensus        17 iigssgvflivkvll   31 (33)
                      |||.||+|..+..++
T Consensus        67 iVGRTGTFiaID~~l   81 (130)
T 2shp_A           67 IIGRTGTFIVIDILI   81 (130)
T ss_dssp             CSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             865999999999999


No 2  
>>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* (G:)
Probab=13.40  E-value=1e+02  Score=14.11  Aligned_cols=12  Identities=58%  Similarity=0.894  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999916
Q gi|254780863|r    9 LIVSAVIFIIGS   20 (33)
Q Consensus         9 livsavifiigs   20 (33)
                      ||..+|.|++|-
T Consensus        24 Li~A~vLfi~GI   35 (74)
T 2zxe_G           24 LIVAAVLCVIGI   35 (74)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             699999999999


No 3  
>>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus} (A:)
Probab=13.06  E-value=1.1e+02  Score=14.03  Aligned_cols=12  Identities=33%  Similarity=0.578  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999916
Q gi|254780863|r    9 LIVSAVIFIIGS   20 (33)
Q Consensus         9 livsavifiigs   20 (33)
                      ||..+|.|+.|-
T Consensus        22 Li~a~vLfi~GI   33 (67)
T 2jp3_A           22 LIFGGLLCIAGI   33 (67)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             499999999999


No 4  
>>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens} (A:)
Probab=12.28  E-value=1.2e+02  Score=13.86  Aligned_cols=12  Identities=33%  Similarity=1.007  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999916
Q gi|254780863|r    9 LIVSAVIFIIGS   20 (33)
Q Consensus         9 livsavifiigs   20 (33)
                      ||..+|.|++|-
T Consensus        21 Li~A~vLfi~GI   32 (72)
T 2jo1_A           21 LVIAGILFILGI   32 (72)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             378999999999


No 5  
>>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R; PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase; 1.81A {Mus musculus} (A:1-65,A:233-297)
Probab=11.49  E-value=52  Score=15.47  Aligned_cols=15  Identities=33%  Similarity=0.640  Sum_probs=9.8

Q ss_pred             HHHCCCHHHHHHHHH
Q ss_conf             991630999999986
Q gi|254780863|r   17 IIGSSGVFLIVKVLL   31 (33)
Q Consensus        17 iigssgvflivkvll   31 (33)
                      |||-+|+|..+..++
T Consensus        65 iVGRTGtFialDi~i   79 (130)
T 1jln_A           65 IIGRTGCFIATSIGC   79 (130)
T ss_dssp             CSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             732111899999999


No 6  
>>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism, phosphorylation, endoplasmic reticulum, oxidation, hydrolase, acetylation; 1.5A {Homo sapiens} (A:1-53,A:225-304)
Probab=9.00  E-value=98  Score=14.21  Aligned_cols=11  Identities=45%  Similarity=0.851  Sum_probs=4.7

Q ss_pred             HHCCCHHHHHH
Q ss_conf             91630999999
Q gi|254780863|r   18 IGSSGVFLIVK   28 (33)
Q Consensus        18 igssgvflivk   28 (33)
                      ||.||+|..+.
T Consensus        54 IGRTGTFcaiD   64 (133)
T 2cm2_A           54 IGRSGTFCLAD   64 (133)
T ss_dssp             SSHHHHHHHHH
T ss_pred             CCCEEHHHHHH
T ss_conf             67552147999


No 7  
>>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine phosphatase, lymphoid phosphatase, PEP, LYP, structural genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A 2qct_A* 2qcj_A* (A:1-63,A:231-309)
Probab=8.75  E-value=78  Score=14.68  Aligned_cols=14  Identities=29%  Similarity=0.494  Sum_probs=7.2

Q ss_pred             HHHCCCHHHHHHHH
Q ss_conf             99163099999998
Q gi|254780863|r   17 IIGSSGVFLIVKVL   30 (33)
Q Consensus        17 iigssgvflivkvl   30 (33)
                      |+|-+|+|..+...
T Consensus        63 ivGRTGtfcaID~~   76 (142)
T 2p6x_A           63 ICGRTGVICAIDYT   76 (142)
T ss_dssp             CSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
T ss_conf             79610399999999


No 8  
>>2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B* (B:)
Probab=7.08  E-value=2e+02  Score=12.72  Aligned_cols=14  Identities=43%  Similarity=0.582  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999999991630
Q gi|254780863|r    9 LIVSAVIFIIGSSG   22 (33)
Q Consensus         9 livsavifiigssg   22 (33)
                      -.+.||||.-|.|-
T Consensus        13 efiraviftcggsr   26 (27)
T 2fhw_B           13 EFIRAVIFTCGGSR   26 (27)
T ss_dssp             HHHHHHHHHHTSSC
T ss_pred             HHHHHHEEECCCCC
T ss_conf             85766226226767


No 9  
>>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=5.87  E-value=1.4e+02  Score=13.49  Aligned_cols=15  Identities=20%  Similarity=0.514  Sum_probs=11.3

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             952066799999999
Q gi|254780863|r    1 MNIGLSHYLIVSAVI   15 (33)
Q Consensus         1 mniglshylivsavi   15 (33)
                      |..|.+||.++.|..
T Consensus        17 mDMGF~reh~~eAL~   31 (47)
T 2ekk_A           17 MDMGFTREHAMEALL   31 (47)
T ss_dssp             HHHHCCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHH
T ss_conf             982123999999998


No 10 
>>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum} (A:)
Probab=5.39  E-value=2.4e+02  Score=12.40  Aligned_cols=20  Identities=50%  Similarity=0.718  Sum_probs=13.2

Q ss_pred             HHHHHHHH-----HCCCHHHHHHHH
Q ss_conf             99999999-----163099999998
Q gi|254780863|r   11 VSAVIFII-----GSSGVFLIVKVL   30 (33)
Q Consensus        11 vsavifii-----gssgvflivkvl   30 (33)
                      |...|-|.     |-||||--||.-
T Consensus        24 vgsiisilggvtvglsgvftavkaa   48 (60)
T 2kjf_A           24 VGSIISILGGVTVGLSGVFTAVKAA   48 (60)
T ss_dssp             HHHHHHHHCSSCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEECHHHHHHHHHHH
T ss_conf             6678876547255003579999999


Done!