Query         gi|254780863|ref|YP_003065276.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 21:34:10 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780863.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2zxe_G FXYD10, phospholemman-l  11.9      86  0.0036   13.8   1.8   12    9-20     24-35  (74)
  2 2fhw_B Relaxin 3 (prorelaxin H   8.6 1.2E+02  0.0051   13.1   1.8   14    9-22     13-26  (27)
  3 2jo1_A Phospholemman; FXYD1, N   7.4 1.4E+02  0.0059   12.8   1.8   12    9-20     21-32  (72)
  4 1few_A Second mitochondria-der   6.0 1.7E+02   0.007   12.4   2.3   24    4-27     12-36  (184)
  5 2ekk_A UBA domain from E3 ubiq   6.0   1E+02  0.0044   13.4   0.2   15    1-15     17-31  (47)
  6 2jp3_A FXYD domain-containing    5.7 1.8E+02  0.0074   12.3   1.8   11    9-19     22-32  (67)
  7 2kjf_A Carnocyclin-A; circular   5.4 1.7E+02  0.0071   12.4   0.9   20   11-30     24-48  (60)
  8 2p1l_B Beclin 1; apoptosis, au   5.2 1.9E+02  0.0079   12.2   2.4   18    4-21      7-24  (31)
  9 2kbc_B INSL5_B-chain; peptide    4.7   2E+02  0.0086   12.0   1.0   13   10-22     11-23  (26)
 10 1btq_A BAND 3 anion transport    3.1 2.1E+02   0.009   11.9  -0.1    5   13-17      5-9   (26)

No 1  
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.88  E-value=86  Score=13.76  Aligned_cols=12  Identities=58%  Similarity=0.894  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999916
Q gi|254780863|r    9 LIVSAVIFIIGS   20 (33)
Q Consensus         9 livsavifiigs   20 (33)
                      ||..+|.|++|-
T Consensus        24 Li~a~vLf~~GI   35 (74)
T 2zxe_G           24 LIVAAVLCVIGI   35 (74)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             067999999999


No 2  
>2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B*
Probab=8.61  E-value=1.2e+02  Score=13.08  Aligned_cols=14  Identities=43%  Similarity=0.582  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHCCC
Q ss_conf             99999999991630
Q gi|254780863|r    9 LIVSAVIFIIGSSG   22 (33)
Q Consensus         9 livsavifiigssg   22 (33)
                      -...||||.-|+|-
T Consensus        13 efiraviftcggsr   26 (27)
T 2fhw_B           13 EFIRAVIFTCGGSR   26 (27)
T ss_dssp             HHHHHHHHHHTSSC
T ss_pred             HHHHHHEEECCCCC
T ss_conf             74654046226767


No 3  
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=7.36  E-value=1.4e+02  Score=12.79  Aligned_cols=12  Identities=33%  Similarity=1.007  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHC
Q ss_conf             999999999916
Q gi|254780863|r    9 LIVSAVIFIIGS   20 (33)
Q Consensus         9 livsavifiigs   20 (33)
                      ||+.+|.|++|.
T Consensus        21 Li~a~vlf~~Gi   32 (72)
T 2jo1_A           21 LVIAGILFILGI   32 (72)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             245899999999


No 4  
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=6.01  E-value=1.7e+02  Score=12.43  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             HHHH-HHHHHHHHHHHHCCCHHHHH
Q ss_conf             0667-99999999999163099999
Q gi|254780863|r    4 GLSH-YLIVSAVIFIIGSSGVFLIV   27 (33)
Q Consensus         4 glsh-ylivsavifiigssgvfliv   27 (33)
                      .||| .||-.|+.....|+..||--
T Consensus        12 ~LShe~LIrrA~slv~DSasT~LSQ   36 (184)
T 1few_A           12 SLSSEALMRRAVSLVTDSTSTFLSQ   36 (184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5775999999999998049899999


No 5  
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.99  E-value=1e+02  Score=13.39  Aligned_cols=15  Identities=20%  Similarity=0.514  Sum_probs=11.3

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             952066799999999
Q gi|254780863|r    1 MNIGLSHYLIVSAVI   15 (33)
Q Consensus         1 mniglshylivsavi   15 (33)
                      |..|.+||.++.|..
T Consensus        17 mDMGF~r~h~~eAL~   31 (47)
T 2ekk_A           17 MDMGFTREHAMEALL   31 (47)
T ss_dssp             HHHHCCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHH
T ss_conf             983241999999998


No 6  
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=5.65  E-value=1.8e+02  Score=12.32  Aligned_cols=11  Identities=36%  Similarity=0.685  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999991
Q gi|254780863|r    9 LIVSAVIFIIG   19 (33)
Q Consensus         9 livsavifiig   19 (33)
                      ||..+|.|+.|
T Consensus        22 Li~a~vlf~~G   32 (67)
T 2jp3_A           22 LIFGGLLCIAG   32 (67)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
T ss_conf             15799999999


No 7  
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=5.39  E-value=1.7e+02  Score=12.40  Aligned_cols=20  Identities=50%  Similarity=0.718  Sum_probs=13.2

Q ss_pred             HHHHHHHH-----HCCCHHHHHHHH
Q ss_conf             99999999-----163099999998
Q gi|254780863|r   11 VSAVIFII-----GSSGVFLIVKVL   30 (33)
Q Consensus        11 vsavifii-----gssgvflivkvl   30 (33)
                      |...|-|.     |-||||--||.-
T Consensus        24 vgsiisilggvtvglsgvftavkaa   48 (60)
T 2kjf_A           24 VGSIISILGGVTVGLSGVFTAVKAA   48 (60)
T ss_dssp             HHHHHHHHCSSCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEECHHHHHHHHHHH
T ss_conf             6678876547255003579999999


No 8  
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=5.22  E-value=1.9e+02  Score=12.18  Aligned_cols=18  Identities=39%  Similarity=0.351  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             066799999999999163
Q gi|254780863|r    4 GLSHYLIVSAVIFIIGSS   21 (33)
Q Consensus         4 glshylivsavifiigss   21 (33)
                      .+||-+-|++-.|-|-|.
T Consensus         7 nlS~RlKvts~LFDiMSG   24 (31)
T 2p1l_B            7 NLSRRLKVTGDLFDIMSG   24 (31)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHCC
T ss_conf             345555458888888638


No 9  
>2kbc_B INSL5_B-chain; peptide hormone, relaxin, insulin-like fold; HET: PCA; NMR {Synthetic}
Probab=4.67  E-value=2e+02  Score=12.01  Aligned_cols=13  Identities=38%  Similarity=0.567  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             9999999991630
Q gi|254780863|r   10 IVSAVIFIIGSSG   22 (33)
Q Consensus        10 ivsavifiigssg   22 (33)
                      -+..||+|-.||.
T Consensus        11 yirtviyicassr   23 (26)
T 2kbc_B           11 YIRTVIYICASSR   23 (26)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEECC
T ss_conf             2567889973030


No 10 
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=3.06  E-value=2.1e+02  Score=11.93  Aligned_cols=5  Identities=100%  Similarity=1.384  Sum_probs=0.0

Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780863|r   13 AVIFI   17 (33)
Q Consensus        13 avifi   17 (33)
                      |||||
T Consensus         5 avifi    9 (26)
T 1btq_A            5 AVIFI    9 (26)
T ss_pred             EEHHH
T ss_conf             30488


Done!