Query gi|254780863|ref|YP_003065276.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 33 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 21:34:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780863.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zxe_G FXYD10, phospholemman-l 11.9 86 0.0036 13.8 1.8 12 9-20 24-35 (74) 2 2fhw_B Relaxin 3 (prorelaxin H 8.6 1.2E+02 0.0051 13.1 1.8 14 9-22 13-26 (27) 3 2jo1_A Phospholemman; FXYD1, N 7.4 1.4E+02 0.0059 12.8 1.8 12 9-20 21-32 (72) 4 1few_A Second mitochondria-der 6.0 1.7E+02 0.007 12.4 2.3 24 4-27 12-36 (184) 5 2ekk_A UBA domain from E3 ubiq 6.0 1E+02 0.0044 13.4 0.2 15 1-15 17-31 (47) 6 2jp3_A FXYD domain-containing 5.7 1.8E+02 0.0074 12.3 1.8 11 9-19 22-32 (67) 7 2kjf_A Carnocyclin-A; circular 5.4 1.7E+02 0.0071 12.4 0.9 20 11-30 24-48 (60) 8 2p1l_B Beclin 1; apoptosis, au 5.2 1.9E+02 0.0079 12.2 2.4 18 4-21 7-24 (31) 9 2kbc_B INSL5_B-chain; peptide 4.7 2E+02 0.0086 12.0 1.0 13 10-22 11-23 (26) 10 1btq_A BAND 3 anion transport 3.1 2.1E+02 0.009 11.9 -0.1 5 13-17 5-9 (26) No 1 >2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G* Probab=11.88 E-value=86 Score=13.76 Aligned_cols=12 Identities=58% Similarity=0.894 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999999916 Q gi|254780863|r 9 LIVSAVIFIIGS 20 (33) Q Consensus 9 livsavifiigs 20 (33) ||..+|.|++|- T Consensus 24 Li~a~vLf~~GI 35 (74) T 2zxe_G 24 LIVAAVLCVIGI 35 (74) T ss_dssp HHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 067999999999 No 2 >2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B* Probab=8.61 E-value=1.2e+02 Score=13.08 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHCCC Q ss_conf 99999999991630 Q gi|254780863|r 9 LIVSAVIFIIGSSG 22 (33) Q Consensus 9 livsavifiigssg 22 (33) -...||||.-|+|- T Consensus 13 efiraviftcggsr 26 (27) T 2fhw_B 13 EFIRAVIFTCGGSR 26 (27) T ss_dssp HHHHHHHHHHTSSC T ss_pred HHHHHHEEECCCCC T ss_conf 74654046226767 No 3 >2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens} Probab=7.36 E-value=1.4e+02 Score=12.79 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=9.1 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999999916 Q gi|254780863|r 9 LIVSAVIFIIGS 20 (33) Q Consensus 9 livsavifiigs 20 (33) ||+.+|.|++|. T Consensus 21 Li~a~vlf~~Gi 32 (72) T 2jo1_A 21 LVIAGILFILGI 32 (72) T ss_dssp HHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 245899999999 No 4 >1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1 Probab=6.01 E-value=1.7e+02 Score=12.43 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.0 Q ss_pred HHHH-HHHHHHHHHHHHCCCHHHHH Q ss_conf 0667-99999999999163099999 Q gi|254780863|r 4 GLSH-YLIVSAVIFIIGSSGVFLIV 27 (33) Q Consensus 4 glsh-ylivsavifiigssgvfliv 27 (33) .||| .||-.|+.....|+..||-- T Consensus 12 ~LShe~LIrrA~slv~DSasT~LSQ 36 (184) T 1few_A 12 SLSSEALMRRAVSLVTDSTSTFLSQ 36 (184) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5775999999999998049899999 No 5 >2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=5.99 E-value=1e+02 Score=13.39 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=11.3 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 952066799999999 Q gi|254780863|r 1 MNIGLSHYLIVSAVI 15 (33) Q Consensus 1 mniglshylivsavi 15 (33) |..|.+||.++.|.. T Consensus 17 mDMGF~r~h~~eAL~ 31 (47) T 2ekk_A 17 MDMGFTREHAMEALL 31 (47) T ss_dssp HHHHCCHHHHHHHHH T ss_pred HHCCCHHHHHHHHHH T ss_conf 983241999999998 No 6 >2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus} Probab=5.65 E-value=1.8e+02 Score=12.32 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=8.2 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999991 Q gi|254780863|r 9 LIVSAVIFIIG 19 (33) Q Consensus 9 livsavifiig 19 (33) ||..+|.|+.| T Consensus 22 Li~a~vlf~~G 32 (67) T 2jp3_A 22 LIFGGLLCIAG 32 (67) T ss_dssp HHHHHHHHHHH T ss_pred CHHHHHHHHHH T ss_conf 15799999999 No 7 >2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum} Probab=5.39 E-value=1.7e+02 Score=12.40 Aligned_cols=20 Identities=50% Similarity=0.718 Sum_probs=13.2 Q ss_pred HHHHHHHH-----HCCCHHHHHHHH Q ss_conf 99999999-----163099999998 Q gi|254780863|r 11 VSAVIFII-----GSSGVFLIVKVL 30 (33) Q Consensus 11 vsavifii-----gssgvflivkvl 30 (33) |...|-|. |-||||--||.- T Consensus 24 vgsiisilggvtvglsgvftavkaa 48 (60) T 2kjf_A 24 VGSIISILGGVTVGLSGVFTAVKAA 48 (60) T ss_dssp HHHHHHHHCSSCTTTHHHHHHHHHH T ss_pred HHHHHHHHCCCEECHHHHHHHHHHH T ss_conf 6678876547255003579999999 No 8 >2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A Probab=5.22 E-value=1.9e+02 Score=12.18 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=15.1 Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 066799999999999163 Q gi|254780863|r 4 GLSHYLIVSAVIFIIGSS 21 (33) Q Consensus 4 glshylivsavifiigss 21 (33) .+||-+-|++-.|-|-|. T Consensus 7 nlS~RlKvts~LFDiMSG 24 (31) T 2p1l_B 7 NLSRRLKVTGDLFDIMSG 24 (31) T ss_dssp HHHHHHHHHHHHHHHTTC T ss_pred CHHHHHHHHHHHHHHHCC T ss_conf 345555458888888638 No 9 >2kbc_B INSL5_B-chain; peptide hormone, relaxin, insulin-like fold; HET: PCA; NMR {Synthetic} Probab=4.67 E-value=2e+02 Score=12.01 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=9.8 Q ss_pred HHHHHHHHHHCCC Q ss_conf 9999999991630 Q gi|254780863|r 10 IVSAVIFIIGSSG 22 (33) Q Consensus 10 ivsavifiigssg 22 (33) -+..||+|-.||. T Consensus 11 yirtviyicassr 23 (26) T 2kbc_B 11 YIRTVIYICASSR 23 (26) T ss_dssp HHHHHHHHHHHHH T ss_pred EEEEEEEEEEECC T ss_conf 2567889973030 No 10 >1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A Probab=3.06 E-value=2.1e+02 Score=11.93 Aligned_cols=5 Identities=100% Similarity=1.384 Sum_probs=0.0 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780863|r 13 AVIFI 17 (33) Q Consensus 13 avifi 17 (33) ||||| T Consensus 5 avifi 9 (26) T 1btq_A 5 AVIFI 9 (26) T ss_pred EEHHH T ss_conf 30488 Done!