BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780863|ref|YP_003065276.1| hypothetical protein
CLIBASIA_03790 [Candidatus Liberibacter asiaticus str. psy62]
(33 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780863|ref|YP_003065276.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040540|gb|ACT57336.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 33
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/33 (100%), Positives = 33/33 (100%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY 33
MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
Sbjct: 1 MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY 33
>gi|315122715|ref|YP_004063204.1| NADH-ubiquinone oxidoreductase, chain 4L [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496117|gb|ADR52716.1| NADH-ubiquinone oxidoreductase, chain 4L [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 102
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 23/24 (95%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVF 24
MNI L+HYLIVSA+IFIIGSSGVF
Sbjct: 1 MNINLAHYLIVSAIIFIIGSSGVF 24
>gi|154248542|ref|YP_001419500.1| NADH-ubiquinone oxidoreductase chain 4L [Xanthobacter
autotrophicus Py2]
gi|281312432|sp|A7IP97|NUOK_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit K; AltName:
Full=NADH dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K
gi|154162627|gb|ABS69843.1| NADH-ubiquinone oxidoreductase chain 4L [Xanthobacter
autotrophicus Py2]
Length = 104
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M+IGLSHYL V+A++F +G+ G+FL
Sbjct: 3 MDIGLSHYLTVAAILFTLGTLGIFL 27
>gi|158423302|ref|YP_001524594.1| NADH dehydrogenase I chain K [Azorhizobium caulinodans ORS 571]
gi|281312302|sp|A8I413|NUOK_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit K; AltName:
Full=NADH dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K
gi|158330191|dbj|BAF87676.1| NADH dehydrogenase I chain K [Azorhizobium caulinodans ORS 571]
Length = 102
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL V+A++F +G+ G+FL
Sbjct: 1 MEIGLSHYLTVAAILFTMGTLGIFL 25
>gi|222148285|ref|YP_002549242.1| NADH dehydrogenase subunit K [Agrobacterium vitis S4]
gi|221735273|gb|ACM36236.1| NADH ubiquinone oxidoreductase chain K [Agrobacterium vitis S4]
Length = 102
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL VSA++F++G G+FL
Sbjct: 1 MEIGLSHYLTVSAILFMLGVFGIFL 25
>gi|325292644|ref|YP_004278508.1| NADH dehydrogenase I chain K [Agrobacterium sp. H13-3]
gi|325060497|gb|ADY64188.1| NADH dehydrogenase I chain K [Agrobacterium sp. H13-3]
Length = 102
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL VSA++F IG G+FL
Sbjct: 1 MEIGLSHYLTVSAILFTIGIFGIFL 25
>gi|315499800|ref|YP_004088603.1| NADH-ubiquinone oxidoreductase chain 4l [Asticcacaulis
excentricus CB 48]
gi|315417812|gb|ADU14452.1| NADH-ubiquinone oxidoreductase chain 4L [Asticcacaulis
excentricus CB 48]
Length = 102
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGL HYLIVSA++F IG G+F+
Sbjct: 1 MTIGLEHYLIVSAILFTIGVFGIFM 25
>gi|163759530|ref|ZP_02166615.1| NADH dehydrogenase kappa subunit [Hoeflea phototrophica DFL-43]
gi|162283127|gb|EDQ33413.1| NADH dehydrogenase kappa subunit [Hoeflea phototrophica DFL-43]
Length = 102
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL VSA++F +G G+FL
Sbjct: 1 MEIGLSHYLTVSAILFTLGIFGIFL 25
>gi|49474187|ref|YP_032229.1| NADH dehydrogenase subunit K [Bartonella quintana str. Toulouse]
gi|81647085|sp|Q6FZY1|NUOK_BARQU RecName: Full=NADH-quinone oxidoreductase subunit K; AltName:
Full=NADH dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K
gi|49239691|emb|CAF26066.1| NADH dehydrogenase I, K subunit [Bartonella quintana str.
Toulouse]
Length = 102
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M+I ++HYLIVSA+IF IG +G+FL
Sbjct: 1 MHIDITHYLIVSALIFTIGIAGIFL 25
>gi|190571386|ref|YP_001975744.1| NADH dehydrogenase I, K subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018785|ref|ZP_03334593.1| NADH dehydrogenase I, K subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|225630633|ref|YP_002727424.1| NADH dehydrogenase I, K subunit [Wolbachia sp. wRi]
gi|225631323|ref|ZP_03787997.1| NADH dehydrogenase I, K subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|190357658|emb|CAQ55102.1| NADH dehydrogenase I, K subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995736|gb|EEB56376.1| NADH dehydrogenase I, K subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|225590974|gb|EEH12182.1| NADH dehydrogenase I, K subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225592614|gb|ACN95633.1| NADH dehydrogenase I, K subunit [Wolbachia sp. wRi]
Length = 102
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGL+H+LIV+AV+F IG G+F+
Sbjct: 1 MEIGLNHFLIVAAVLFTIGVCGIFI 25
>gi|254502392|ref|ZP_05114543.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 4L superfamily
[Labrenzia alexandrii DFL-11]
gi|222438463|gb|EEE45142.1| NADH-ubiquinone/plastoquinone oxidoreductase chain 4L superfamily
[Labrenzia alexandrii DFL-11]
Length = 102
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL V+A++F+IG G+FL
Sbjct: 1 MEIGLSHYLSVAAILFVIGIFGIFL 25
>gi|222085587|ref|YP_002544117.1| NADH-ubiquinone oxidoreductase chain K protein [Agrobacterium
radiobacter K84]
gi|221723035|gb|ACM26191.1| NADH-ubiquinone oxidoreductase chain K protein [Agrobacterium
radiobacter K84]
Length = 102
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL VSA++F++G G+FL
Sbjct: 1 MVIGLSHYLTVSAILFVLGVFGIFL 25
>gi|15888609|ref|NP_354290.1| NADH dehydrogenase subunit K [Agrobacterium tumefaciens str. C58]
gi|281312207|sp|A9CJA4|NUOK_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit K; AltName:
Full=NADH dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K
gi|15156331|gb|AAK87075.1| NADH ubiquinone oxidoreductase chain K [Agrobacterium tumefaciens
str. C58]
Length = 102
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL VSA++F IG G+FL
Sbjct: 1 MVIGLSHYLTVSAILFTIGVFGIFL 25
>gi|288958979|ref|YP_003449320.1| NADH dehydrogenase I chain K [Azospirillum sp. B510]
gi|288911287|dbj|BAI72776.1| NADH dehydrogenase I chain K [Azospirillum sp. B510]
Length = 102
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGL HYL VSA+IF +G G+FL
Sbjct: 1 MEIGLGHYLTVSAIIFTLGVLGIFL 25
>gi|15965029|ref|NP_385382.1| NADH dehydrogenase subunit K [Sinorhizobium meliloti 1021]
gi|150396123|ref|YP_001326590.1| NADH dehydrogenase subunit K [Sinorhizobium medicae WSM419]
gi|227821629|ref|YP_002825599.1| NADH dehydrogenase subunit K [Sinorhizobium fredii NGR234]
gi|307301101|ref|ZP_07580870.1| NADH-ubiquinone oxidoreductase chain 4L [Sinorhizobium meliloti
BL225C]
gi|307317835|ref|ZP_07597273.1| NADH-ubiquinone oxidoreductase chain 4L [Sinorhizobium meliloti
AK83]
gi|81634767|sp|Q92QP2|NUOK1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit K 1; AltName:
Full=NADH dehydrogenase I subunit K 1; AltName:
Full=NDH-1 subunit K 1
gi|281312163|sp|C3MA67|NUOK1_RHISN RecName: Full=NADH-quinone oxidoreductase subunit K 1; AltName:
Full=NADH dehydrogenase I subunit K 1; AltName:
Full=NDH-1 subunit K 1
gi|281312164|sp|A6U7X5|NUOK1_SINMW RecName: Full=NADH-quinone oxidoreductase subunit K 1; AltName:
Full=NADH dehydrogenase I subunit K 1; AltName:
Full=NDH-1 subunit K 1
gi|15074208|emb|CAC45855.1| Probable NADH dehydrogenase I chain K transmembrane protein
[Sinorhizobium meliloti 1021]
gi|150027638|gb|ABR59755.1| NADH-ubiquinone oxidoreductase chain 4L [Sinorhizobium medicae
WSM419]
gi|227340628|gb|ACP24846.1| transmembrane NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium fredii NGR234]
gi|306896597|gb|EFN27345.1| NADH-ubiquinone oxidoreductase chain 4L [Sinorhizobium meliloti
AK83]
gi|306904056|gb|EFN34642.1| NADH-ubiquinone oxidoreductase chain 4L [Sinorhizobium meliloti
BL225C]
Length = 102
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IG+SHYL VSA++F +G G+FL
Sbjct: 1 MEIGISHYLTVSAILFTLGVFGIFL 25
>gi|42525210|ref|NP_970590.1| NADH-ubiquinone oxidoreductase chain 4L (chain K) [Bdellovibrio
bacteriovorus HD100]
gi|81615840|sp|Q6MGN5|NUOK_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit K; AltName:
Full=NADH dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K
gi|39577421|emb|CAE81244.1| NADH-ubiquinone oxidoreductase chain 4L (chain K) [Bdellovibrio
bacteriovorus HD100]
Length = 107
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 22/24 (91%)
Query: 2 NIGLSHYLIVSAVIFIIGSSGVFL 25
NIGL+HYL+++A++F++G +GV L
Sbjct: 8 NIGLTHYLVLAALLFVMGMAGVLL 31
>gi|291613548|ref|YP_003523705.1| NADH-ubiquinone oxidoreductase chain 4L [Sideroxydans
lithotrophicus ES-1]
gi|291583660|gb|ADE11318.1| NADH-ubiquinone oxidoreductase chain 4L [Sideroxydans
lithotrophicus ES-1]
Length = 103
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
+N+GLSHYL++SAV+F I G+FL
Sbjct: 2 LNLGLSHYLVLSAVLFAISVVGIFL 26
>gi|307942129|ref|ZP_07657480.1| NADH-quinone oxidoreductase subunit k [Roseibium sp. TrichSKD4]
gi|307774415|gb|EFO33625.1| NADH-quinone oxidoreductase subunit k [Roseibium sp. TrichSKD4]
Length = 102
Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL V+A++F IG G+FL
Sbjct: 1 MEIGLSHYLSVAAILFTIGIFGIFL 25
>gi|89053684|ref|YP_509135.1| NADH dehydrogenase subunit K [Jannaschia sp. CCS1]
gi|88863233|gb|ABD54110.1| NADH dehydrogenase subunit K [Jannaschia sp. CCS1]
Length = 102
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGL HYL V+A +F+IG G+FL
Sbjct: 1 MTIGLEHYLTVAAALFVIGIFGIFL 25
>gi|148555902|ref|YP_001263484.1| NADH-ubiquinone oxidoreductase, chain 4L [Sphingomonas wittichii
RW1]
gi|148501092|gb|ABQ69346.1| NADH-ubiquinone oxidoreductase, chain 4L [Sphingomonas wittichii
RW1]
Length = 101
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 3 IGLSHYLIVSAVIFIIGSSGVFL 25
IGL HYL+VSA++F++G G+FL
Sbjct: 2 IGLQHYLVVSAILFVMGVFGIFL 24
>gi|42520779|ref|NP_966694.1| NADH dehydrogenase I, K subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410519|gb|AAS14628.1| NADH dehydrogenase I, K subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 102
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGL+H+LIV+A++F +G G+F+
Sbjct: 1 MEIGLNHFLIVAAILFTVGVCGIFI 25
>gi|328543697|ref|YP_004303806.1| NADH-quinone oxidoreductase subunit K [polymorphum gilvum
SL003B-26A1]
gi|326413441|gb|ADZ70504.1| NADH-quinone oxidoreductase subunit K [Polymorphum gilvum
SL003B-26A1]
Length = 102
Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL V+A++F IG G+FL
Sbjct: 1 MEIGLSHYLSVAAILFTIGIFGIFL 25
>gi|118590027|ref|ZP_01547431.1| NADH dehydrogenase subunit K [Stappia aggregata IAM 12614]
gi|118437524|gb|EAV44161.1| NADH dehydrogenase subunit K [Stappia aggregata IAM 12614]
Length = 102
Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFL 25
M IGLSHYL V+A++F IG G+FL
Sbjct: 1 MEIGLSHYLSVAAILFTIGIFGIFL 25
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780863|ref|YP_003065276.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040540|gb|ACT57336.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 33
Score = 34.5 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 33/33 (100%), Positives = 33/33 (100%)
Query: 1 MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY 33
MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY
Sbjct: 1 MNIGLSHYLIVSAVIFIIGSSGVFLIVKVLLRY 33
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.337 0.154 0.425
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 748,758,405
Number of Sequences: 14124377
Number of extensions: 19614985
Number of successful extensions: 127270
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 126937
Number of HSP's gapped (non-prelim): 335
length of query: 33
length of database: 4,842,793,630
effective HSP length: 8
effective length of query: 25
effective length of database: 4,729,798,614
effective search space: 118244965350
effective search space used: 118244965350
T: 11
A: 40
X1: 16 ( 7.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 76 (33.6 bits)