RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780863|ref|YP_003065276.1| hypothetical protein
CLIBASIA_03790 [Candidatus Liberibacter asiaticus str. psy62]
         (33 letters)



>gnl|CDD|180218 PRK05715, PRK05715, NADH:ubiquinone oxidoreductase subunit K;
          Validated.
          Length = 100

 Score = 26.3 bits (59), Expect = 1.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 3  IGLSHYLIVSAVIFIIGSSGVFL 25
          I L HYLI++A++F IG  G+ L
Sbjct: 2  IPLQHYLILAAILFCIGLVGLLL 24


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.337    0.154    0.425 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 511,230
Number of extensions: 15928
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 12
Length of query: 33
Length of database: 5,994,473
Length adjustment: 7
Effective length of query: 26
Effective length of database: 5,843,217
Effective search space: 151923642
Effective search space used: 151923642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.1 bits)