Query gi|254780864|ref|YP_003065277.1| NADH-ubiquinone oxidoreductase, chain 4L [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 104 out of 813
Neff 4.9
Searched_HMMs 13730
Date Wed Jun 1 10:53:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780864.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gdta1 a.4.1.2 (A:141-183) ga 6.6 69 0.005 11.9 0.7 14 54-67 2-15 (43)
2 d1v54m_ f.23.7.1 (M:) Mitochon 5.7 82 0.006 11.4 2.6 15 37-51 11-25 (43)
3 d1gdha1 c.2.1.4 (A:101-291) D- 4.8 96 0.007 11.1 2.2 16 34-49 1-16 (191)
4 d1m5ha2 d.58.33.1 (A:146-297) 4.3 1E+02 0.0076 10.9 1.6 10 35-44 31-40 (152)
5 d1m5sa2 d.58.33.1 (A:146-297) 4.0 1.1E+02 0.0081 10.8 1.6 10 35-44 31-40 (152)
6 d1ftra2 d.58.33.1 (A:149-296) 3.3 1.3E+02 0.0094 10.4 1.6 10 35-44 31-40 (148)
7 d2e74d2 f.23.12.1 (D:12-45) IS 2.3 1.8E+02 0.013 9.7 1.6 20 11-30 7-26 (34)
8 d1zkea1 a.30.6.1 (A:1-79) Hypo 2.3 1.8E+02 0.013 9.7 0.5 16 3-18 19-34 (79)
9 d1nm8a2 c.43.1.3 (A:386-599) C 1.8 2.4E+02 0.017 9.0 2.9 20 39-58 23-42 (214)
10 d1t1ua2 c.43.1.3 (A:402-616) C 1.8 2.4E+02 0.017 9.0 2.9 20 39-58 22-41 (215)
No 1
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=6.58 E-value=69 Score=11.86 Aligned_cols=14 Identities=21% Similarity=0.110 Sum_probs=8.3
Q ss_pred HCCCCCHHHHHHCC
Q ss_conf 21785799996218
Q gi|254780864|r 54 KCGSISVDDFNQMK 67 (68)
Q Consensus 54 ~~~si~~d~~~~Lk 67 (68)
++.++|.++...||
T Consensus 2 Rk~~Id~~~V~~L~ 15 (43)
T d1gdta1 2 RKRKIDRDAVLNMW 15 (43)
T ss_dssp SCCCSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
T ss_conf 99854899999999
No 2
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.71 E-value=82 Score=11.44 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780864|r 37 AAAETSIGLAILVIF 51 (68)
Q Consensus 37 AAaEaAiGLAi~v~~ 51 (68)
.+.|.||||..+..-
T Consensus 11 s~~E~aigLt~~f~~ 25 (43)
T d1v54m_ 11 SPKEQAIGLSVTFLS 25 (43)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 799999999999999
No 3
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}
Probab=4.75 E-value=96 Score=11.09 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780864|r 34 LLVAAAETSIGLAILV 49 (68)
Q Consensus 34 l~iAAaEaAiGLAi~v 49 (68)
+++|-||-+++|-+-.
T Consensus 1 ~t~AvAE~ai~liL~~ 16 (191)
T d1gdha1 1 VTVATAEIAMLLLLGS 16 (191)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9789999999999999
No 4
>d1m5ha2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.31 E-value=1e+02 Score=10.91 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780864|r 35 LVAAAETSIG 44 (68)
Q Consensus 35 ~iAAaEaAiG 44 (68)
+++|||+|+.
T Consensus 31 aL~AaeaAV~ 40 (152)
T d1m5ha2 31 ALAAAKAAVD 40 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 5
>d1m5sa2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=3.98 E-value=1.1e+02 Score=10.76 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780864|r 35 LVAAAETSIG 44 (68)
Q Consensus 35 ~iAAaEaAiG 44 (68)
+++|||+|+.
T Consensus 31 aL~AaeaAV~ 40 (152)
T d1m5sa2 31 ALTAAEAAVD 40 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 6
>d1ftra2 d.58.33.1 (A:149-296) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=3.29 E-value=1.3e+02 Score=10.41 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=6.4
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780864|r 35 LVAAAETSIG 44 (68)
Q Consensus 35 ~iAAaEaAiG 44 (68)
++.|||+|+.
T Consensus 31 aL~Aae~AV~ 40 (148)
T d1ftra2 31 GLQAAEAAVD 40 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 7
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.34 E-value=1.8e+02 Score=9.69 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999973783159999
Q gi|254780864|r 11 NLNMISFSAYMQDISGQIFS 30 (68)
Q Consensus 11 nl~~v~f~~~~~~~~Gqi~~ 30 (68)
-+|+.+|+.-.+...|..+.
T Consensus 7 fmnlltfgt~tg~alg~lyp 26 (34)
T d2e74d2 7 FMNLLAFGTVTGVALGALYP 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 88899874487788752446
No 8
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=2.34 E-value=1.8e+02 Score=9.68 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780864|r 3 IELMLLAVNLNMISFS 18 (68)
Q Consensus 3 iElmLnavnl~~v~f~ 18 (68)
||+.||-++++|+-+-
T Consensus 19 I~~lL~~AkiS~vDyI 34 (79)
T d1zkea1 19 IEMLLKLANLSLGDFI 34 (79)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999978762246761
No 9
>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.85 E-value=2.4e+02 Score=9.04 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999721785
Q gi|254780864|r 39 AETSIGLAILVIFYRKCGSI 58 (68)
Q Consensus 39 aEaAiGLAi~v~~yR~~~si 58 (68)
.++-|=+|+-+++||.+|..
T Consensus 23 PDa~iQlalQLA~~r~~g~~ 42 (214)
T d1nm8a2 23 PDAFIQMALQLAYYRIYGQA 42 (214)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHCCCC
T ss_conf 26999999999999980998
No 10
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.84 E-value=2.4e+02 Score=9.03 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999721785
Q gi|254780864|r 39 AETSIGLAILVIFYRKCGSI 58 (68)
Q Consensus 39 aEaAiGLAi~v~~yR~~~si 58 (68)
..+-|=+|+-+++||.+|..
T Consensus 22 PDa~iQlAlQLA~~r~~g~~ 41 (215)
T d1t1ua2 22 PDGFIQVALQLAYYRLYQRL 41 (215)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHCCCC
T ss_conf 26999999999999981999
Done!