RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780864|ref|YP_003065277.1| NADH-ubiquinone
oxidoreductase, chain 4L [Candidatus Liberibacter asiaticus str.
psy62]
(68 letters)
>gnl|CDD|31057 COG0713, NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L
(chain K) [Energy production and conversion].
Length = 100
Score = 72.8 bits (179), Expect = 2e-14
Identities = 40/68 (58%), Positives = 58/68 (85%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
MSIELML AVNLN ++FS+Y+ D+ GQ+F++F++ VAAAE ++GLAILV YR+ G+I++
Sbjct: 33 MSIELMLNAVNLNFVAFSSYLGDLDGQVFAIFVITVAAAEAAVGLAILVALYRRRGTINI 92
Query: 61 DDFNQMKG 68
DD N+M+G
Sbjct: 93 DDLNEMRG 100
>gnl|CDD|176958 CHL00015, ndhE, NADH dehydrogenase subunit 4L.
Length = 101
Score = 64.3 bits (157), Expect = 7e-12
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 1 MSIELMLLAVNLNMISFSAYM--QDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSI 58
M +EL+L AVN+N ++FS + + + G IFS+F++ +AAAE +IGLAI+ YR S
Sbjct: 32 MCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAIVSSIYRNRKST 91
Query: 59 SVDDFNQMK 67
++ N +K
Sbjct: 92 RINQSNLLK 100
>gnl|CDD|177231 MTH00180, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 99
Score = 62.7 bits (153), Expect = 2e-11
Identities = 36/68 (52%), Positives = 51/68 (75%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
MSIELMLLA++L + S + ++ GQIF++ IL VAAAE++IGLAILV +YR G+I+V
Sbjct: 32 MSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAV 91
Query: 61 DDFNQMKG 68
N ++G
Sbjct: 92 KSLNLLRG 99
>gnl|CDD|144131 pfam00420, Oxidored_q2, NADH-ubiquinone/plastoquinone
oxidoreductase chain 4L.
Length = 96
Score = 59.8 bits (146), Expect = 1e-10
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
+ +ELM+L++ L ++ FS + D Q L +L+ AA E ++GLA+LV YR G+ V
Sbjct: 29 LCLELMMLSLFLLLVLFSLLLADPLPQALPLTLLVFAACEAALGLALLVALYRTHGTDDV 88
Query: 61 DDFNQMKG 68
N +K
Sbjct: 89 QSLNLLKC 96
>gnl|CDD|177099 MTH00001, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 99
Score = 51.6 bits (124), Expect = 4e-08
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
+SIEL+LL+ + S + + QIF++ L +AAAE++IGLAI+V +YR G+IS+
Sbjct: 32 VSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISL 91
Query: 61 DDFNQMKG 68
N ++G
Sbjct: 92 KSLNSLRG 99
>gnl|CDD|177240 MTH00192, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 99
Score = 49.5 bits (118), Expect = 2e-07
Identities = 33/68 (48%), Positives = 51/68 (75%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
MSIEL+LLA++ +I +S + ++ G IFSL +L VAAAE++IGLAILV ++R G+I++
Sbjct: 32 MSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTGTITI 91
Query: 61 DDFNQMKG 68
N ++G
Sbjct: 92 KALNLLRG 99
>gnl|CDD|39868 KOG4669, KOG4669, KOG4669, NADH dehydrogenase subunit 4L and
related proteins [Energy production and conversion].
Length = 100
Score = 42.1 bits (99), Expect = 3e-05
Identities = 32/68 (47%), Positives = 46/68 (67%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
M +E MLLAVN N + F+ D+ GQ+F++ +L AAAE +IGLAILV +R G+I V
Sbjct: 33 MCLESMLLAVNSNFLFFTLSSDDMMGQVFAILVLTFAAAEAAIGLAILVSIFRTRGTIYV 92
Query: 61 DDFNQMKG 68
+ N ++G
Sbjct: 93 EFINLLQG 100
>gnl|CDD|177118 MTH00043, ND4L, NADH dehydrogenase subunit 4L; Validated.
Length = 98
Score = 30.3 bits (69), Expect = 0.13
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
+ +EL+L+++ LN+ +S + S FSL +L ++A E SIGL+++V+ R S V
Sbjct: 31 LCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVLLSRNHNSDLV 90
Query: 61 DDFNQMK 67
N ++
Sbjct: 91 ASLNLLQ 97
>gnl|CDD|177184 MTH00125, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 98
Score = 27.9 bits (63), Expect = 0.61
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGS 57
+ +E M+L++ + + + Q S + +L +A E GLA+LV R GS
Sbjct: 31 LCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVATTRTHGS 87
>gnl|CDD|177206 MTH00149, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 97
Score = 27.9 bits (63), Expect = 0.67
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 2 SIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISVD 61
S+E ++L++ L M+ S+ + S +F L IL A E S+GL++LV R G+ V
Sbjct: 33 SLEALMLSL-LVMMFSSSGLISFSSYLF-LIILTFGACEASLGLSLLVSLIRLHGNDYVS 90
Query: 62 DFNQMK 67
+ +K
Sbjct: 91 SLSSLK 96
>gnl|CDD|177232 MTH00181, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 93
Score = 25.7 bits (57), Expect = 2.6
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 3 IELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISVDD 62
+E M+L + L + FS S +F L +L +A E +GL++LV R GS +
Sbjct: 30 LEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRTHGSDHLLK 89
Query: 63 FN 64
FN
Sbjct: 90 FN 91
>gnl|CDD|177237 MTH00188, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 97
Score = 25.7 bits (57), Expect = 3.1
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
+S+E ++L++ ++ +YM+ SL +L AA E S+GLA+LV R GS V
Sbjct: 32 LSLEAIMLSLFWFLLVGLSYME--KELYLSLVLLTFAACEASVGLALLVSLIRSHGSDYV 89
Query: 61 DDFNQMK 67
N +K
Sbjct: 90 SSLNLIK 96
>gnl|CDD|177139 MTH00067, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 98
Score = 24.6 bits (54), Expect = 7.2
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 3 IELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGS 57
+E M+L++ + + +S + +S +F+L +A E S GLA++V R G+
Sbjct: 33 LEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVATTRTHGT 87
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.330 0.141 0.381
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 727,464
Number of extensions: 29687
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 27
Length of query: 68
Length of database: 6,263,737
Length adjustment: 39
Effective length of query: 29
Effective length of database: 5,420,986
Effective search space: 157208594
Effective search space used: 157208594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.2 bits)