RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780864|ref|YP_003065277.1| NADH-ubiquinone
oxidoreductase, chain 4L [Candidatus Liberibacter asiaticus str.
psy62]
         (68 letters)



>gnl|CDD|180218 PRK05715, PRK05715, NADH:ubiquinone oxidoreductase subunit K;
           Validated.
          Length = 100

 Score = 93.3 bits (233), Expect = 1e-20
 Identities = 41/68 (60%), Positives = 55/68 (80%)

Query: 1   MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
           MSIELML AVNLN ++FS+Y+ D+ GQ+F+ F++ VAAAE +IGLAIL+  YR  G+I V
Sbjct: 33  MSIELMLNAVNLNFVAFSSYLGDLDGQVFAFFVITVAAAEAAIGLAILLQLYRNRGTIDV 92

Query: 61  DDFNQMKG 68
           DD N++KG
Sbjct: 93  DDLNELKG 100


>gnl|CDD|131077 TIGR02022, hutF, formiminoglutamate deiminase.  In some species,
           histidine utilization goes via urocanate to glutamate in
           four step, the last being removal of formamide. This
           model describes an alternate fourth step,
           formiminoglutamate hydrolase, which leads to
           N-formyl-L-glutamate. This product may be acted on by
           formylglutamate amidohydrolase (TIGR02017) and bypass
           glutamate as a product during its degradation.
           Alternatively, removal of formate (by EC 3.5.1.68) would
           yield glutamate.
          Length = 455

 Score = 26.3 bits (58), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 34  LLVAAAETSIGLAILVIFYRKCG 56
           +  AAA+  IGL +L +FY   G
Sbjct: 142 IAAAAADAGIGLTLLPVFYAHSG 164


>gnl|CDD|151313 pfam10864, DUF2663, Protein of unknown function (DUF2663).  Some
          members in this family of proteins are annotated as
          YpbF however currently no function is known.
          Length = 131

 Score = 24.2 bits (53), Expect = 7.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 5  LMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRK 54
          + L A      SF++++  I      LF LL+AA   S G A  V F +K
Sbjct: 36 IYLYAKVTGSYSFTSFLSAILASPVHLFWLLLAA--LSYGTA--VYFKKK 81


>gnl|CDD|184821 PRK14788, PRK14788, lipoprotein signal peptidase; Provisional.
          Length = 200

 Score = 24.2 bits (53), Expect = 7.9
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 24  ISGQIFSLF--ILLVAAAETSIGLAILVIFYRKCGSISVD 61
             G+ F  F  +  +A +  SIG+ +L++F +K     +D
Sbjct: 161 WGGEHFVFFKPVFNIADSAISIGVILLLLFNKKAFPEPLD 200


>gnl|CDD|181712 PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated.
          Length = 456

 Score = 24.0 bits (53), Expect = 9.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 34  LLVAAAETSIGLAILVIFY 52
           ++ AA    IGL +L + Y
Sbjct: 142 IVAAARAAGIGLTLLPVLY 160


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.330    0.141    0.381 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,028,012
Number of extensions: 49896
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 21
Length of query: 68
Length of database: 5,994,473
Length adjustment: 39
Effective length of query: 29
Effective length of database: 5,151,761
Effective search space: 149401069
Effective search space used: 149401069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.2 bits)