RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780864|ref|YP_003065277.1| NADH-ubiquinone
oxidoreductase, chain 4L [Candidatus Liberibacter asiaticus str.
psy62]
         (68 letters)



>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4
          protein), structural genomics, PSI, protein structure
          initiative; 2.28A {Saccharomyces cerevisiae}
          (A:1-45,A:138-253)
          Length = 161

 Score = 23.9 bits (51), Expect = 9.1
 Identities = 6/33 (18%), Positives = 17/33 (51%)

Query: 16 SFSAYMQDISGQIFSLFILLVAAAETSIGLAIL 48
          ++S Y+ DI G +  +  + + ++ +     +L
Sbjct: 30 NYSTYLLDIEGTVCPIKRVFIYSSGSVKAQKLL 62


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.330    0.141    0.381 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 422,838
Number of extensions: 12256
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 4,956,049
Length adjustment: 35
Effective length of query: 33
Effective length of database: 3,772,874
Effective search space: 124504842
Effective search space used: 124504842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.2 bits)