HHsearch alignment for GI: 254780865 and conserved domain: CHL00011
>CHL00011 ndhD NADH dehydrogenase subunit 4.
Probab=100.00 E-value=0 Score=683.59 Aligned_cols=468 Identities=22% Similarity=0.358 Sum_probs=388.3
Q ss_pred CCHH--HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEE
Q ss_conf 9207--98999999999999997301242147899999999999999999999972589852899975310130882235
Q gi|254780865|r 1 MAMI--YEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIP 78 (666)
Q Consensus 1 M~~l--~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~ 78 (666)
T Consensus 1 M~~~P~L~lli~lPllga~li~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Wi~~--~gi~ 77 (500)
T CHL00011 1 MNYFPWLTIIVVLPIFAGSLIFFLPHR-GNKVIRWYTICICLLELLLTTYAFCYHFQLDDPLIQLVEDYKWINF--FDFH 77 (500)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--CCCE
T ss_conf 998779999999999999999997442-3139999999999999999999999980768885689973442465--7806
Q ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77874337899999999999999999747530688866189999999999999998655899998888885688998876
Q gi|254780865|r 79 WGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGF 158 (666)
Q Consensus 79 ~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~ 158 (666)
T Consensus 78 ~~lgiDgLs~~lvlLt~~i~~l~~l~s~~~~-~--~~~~f~~l~L~~~~~~~G~~~s~dl~~~yvf~E~~~i~sy~LI~~ 154 (500)
T CHL00011 78 WRLGIDGLSIGLILLTGFITTLATLAAWPVT-R--NSRLFHFLMLAMYSGQIGLFSSQDLLLFFLMWELELIPVYLLLSM 154 (500)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC-C--CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8873168789999999999999998404324-6--754999999999999999999753999999999999878751110
Q ss_pred HCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2034454103630002212247899999999999962---0598999987543100012455556666666653202455
Q gi|254780865|r 159 WSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFH---SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHP 235 (666)
Q Consensus 159 ~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~g---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
T Consensus 155 ~g~~-~~~~aa~k~~l~t~~gs~~lL~gi~~l~~~~~~~~t~~~~~l~~~---------------------------~~~ 206 (500)
T CHL00011 155 WGGK-KRLYSATKFILYTAGGSIFLLIGVLGMGLYGSNEPTLNFETLANQ---------------------------SYP 206 (500)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC---------------------------CCC
T ss_conf 4888-999999999999988899999999999999854488899999844---------------------------563
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCC-CCHHHHHHHHHHHH
Q ss_conf 31799999999999865433432343124000-023322100013456666777999963-0135-78134444567777
Q gi|254780865|r 236 HDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFE-LSPFVLDCITVLGC 312 (666)
Q Consensus 236 ~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~-~~~~~~~~~~~~g~ 312 (666)
T Consensus 207 ~~~~~~~~~~~ligf~vK~~~fP~H~WlPda~~~ap~~~s~ll-sg~~~k~g~y~l~R~~~~~~~~~~~~~~~~l~~lg~ 285 (500)
T CHL00011 207 VALEILFYIGFLIAFAVKLPIIPLHTWLPDTHGEAHYSTCMLL-AGILLKMGAYGLIRINMELLPHAHSLFSPWLVIVGA 285 (500)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 2599999999999999852845460116777778983999999-999999888777985000142378999999999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 78876300111024520244321000135334456553---111003465553100012222101232111000011012
Q gi|254780865|r 313 ITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRM 389 (666)
Q Consensus 313 ~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~ 389 (666)
T Consensus 286 it~i~g~~~Al~Q~d~KrllAYSsis~~G~i~lg~~~~~~~g~~ga~~~~~~H~~~k~~LFl~~g~i~~-~~gt~~i~~l 364 (500)
T CHL00011 286 IQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQMISHGFIGAALFFLAGTSYD-RIRLLYLDEM 364 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEHHCC
T ss_conf 999999999999701788889841744889999998706889999899999999999999999999998-1587751403
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCHHHHHHHHHHHHHCCC
Q ss_conf 7761546699999998864210110000000024432178888889864102444-----44210221134543331034
Q gi|254780865|r 390 GGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFV-----FFLLLFAAFLTSFYSWRLMF 464 (666)
Q Consensus 390 gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~-----~~~~~~~~~lt~~Y~~r~~~ 464 (666)
T Consensus 365 gGl~~~~P~~a~~~~i~~la~~G~P------~~~GF~~k~~i~~g~~~~~~~~~~~~~~~~~i~~~g~il~a~Y~l~~~~ 438 (500)
T CHL00011 365 GGIAIPMPKIFTMFSSFSMASLALP------GMSGFVAELIVFFGIITSQKYLLMFKILITFVMAIGMILTPIYLLSMLR 438 (500)
T ss_pred CCHHHHCHHHHHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7807666499999999999981687------5253889999999999716432578999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 24578744332100000013553332024565666321000001246
Q gi|254780865|r 465 LTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFF 511 (666)
Q Consensus 465 ~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~ 511 (666)
T Consensus 439 ~~f~g~~~~~-~~~~~~~d~~~~e~~~~~~l~~~~i~~Gl~P~~~l~ 484 (500)
T CHL00011 439 QMFYGYKLFN-VPNSYFFDSGPRELFISICLLLPVIGIGIYPDFVLS 484 (500)
T ss_pred HHHCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9977998876-653356689888999999999999999837599999