HHsearch alignment for GI: 254780865 and conserved domain: MTH00011

>MTH00011 ND2 NADH dehydrogenase subunit 2; Validated.
Probab=100.00  E-value=0  Score=356.28  Aligned_cols=325  Identities=18%  Similarity=0.229  Sum_probs=256.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             18999999999999999865589999888888568899887620344541036300022122478999999999999620
Q gi|254780865|r  117 RFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHS  196 (666)
Q Consensus       117 ~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs  196 (666)
T Consensus         7 ~~~lf~~~li~g~l~~isS~~~~~lwvglEl~~l~~~~Li~~~-~~~~s~eaa~KYFl~qs~~S~~~L~g~~~~~~~~~~   85 (333)
T MTH00011          7 TMLLFFSTLTMGTLMALSSNNWLFLWMGMELNLLSFVPLIASS-QMNQETEAAVKYFLAQALGSGLLLMSSVMSMMWSSS   85 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999899999999999999999999859-995089999999999999999999999999998888


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC-CCCCCC
Q ss_conf             5989999875431000124555566666666532024553179999999999986543343234312400002-332210
Q gi|254780865|r  197 VDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSA  275 (666)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~a-PtpvSA  275 (666)
T Consensus        86 ~~---------------------------------------~~~~~~~li~~~l~~Klg~~PfH~W~pdv~~~~~~~~~~  126 (333)
T MTH00011         86 SL---------------------------------------MKNTTALMLLLSILLKLGSAPCHFWYPSVMSSISWLSCL  126 (333)
T ss_pred             HH---------------------------------------HHHHHHHHHHHHHHHHHHCCCHHHCHHHHHCCCCHHHHH
T ss_conf             88---------------------------------------778999999999999980021220338887379789999


Q ss_pred             CHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             0013456666777-999963013578134444567777788763001110245202443210001353344565531110
Q gi|254780865|r  276 LIHAATMVTAGVF-LVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGA  354 (666)
Q Consensus       276 llhs~~mv~~Gvy-~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~  354 (666)
T Consensus       127 ~l-s-t~~Ki~~l~~l~~~~~-----~~~~~~~~~~~~lS~lvG~i~al~Q~~lKrllAYSSI~h~G~~l~~~~~~~~~~  199 (333)
T MTH00011        127 IL-S-TWQKLAPLSILNFITP-----HNITAYILSMAAMNALVGGLGGMNQTQLRALMAYSSIGHLGWMMSMAIVFKPSI  199 (333)
T ss_pred             HH-H-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99-9-9999989999999974-----206999999999999999875443023009999999999999999999856999


Q ss_pred             HHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             03465553100012222101232111000011012776154669999999886421011000000002443217888888
Q gi|254780865|r  355 SIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEV  434 (666)
Q Consensus       355 a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~  434 (666)
T Consensus       200 ~~~y~~~y~~~~~~lf~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~i~llSLaGiP------P~~GF~~K~~i~~~  268 (333)
T MTH00011        200 FIIYFMVYCIITSPLMLMMFYL-----SSFNSKFNSKLSSMSYITFMSLMILLFSLGGLP------PFTGFLPKWMIINS  268 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------HHCHHHHHHHHHHH
T ss_conf             9999999999999999999999-----864299998398885999999999998762131------01218899999999


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             986410244444210221134543331034245787443321000000135533320245656663210000
Q gi|254780865|r  435 AYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIF  506 (666)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~  506 (666)
T Consensus       269 ~~~~g~~-~l~~~lil~S~isl~yYlRi~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~g~~p  333 (333)
T MTH00011        269 LTSSEMS-LILLTLITGSLMNLFYYLSIIFNFITMMPTCSNL------TSAPTPGANLILTSICTLTLGLAP  333 (333)
T ss_pred             HHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             9987839-9999999999999999999999998179999988------889842699999999999970899