HHsearch alignment for GI: 254780865 and conserved domain: MTH00044

>MTH00044 ND4 NADH dehydrogenase subunit 4; Validated.
Probab=100.00  E-value=0  Score=580.63  Aligned_cols=397  Identities=19%  Similarity=0.265  Sum_probs=335.3

Q ss_pred             EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3577874337899999999999999999747530688--86618999999999999999865589999888888568899
Q gi|254780865|r   77 IPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDP--HRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYL  154 (666)
Q Consensus        77 ~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~--~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~  154 (666)
T Consensus        53 ~~~~~~~D~lS~~lilLt~~l~~l~~laS~~~l~~~~~~~~~~f~~lll~l~~~l~~~F~s~dl~~fyiffE~~lIp~~~  132 (460)
T MTH00044         53 LSLSLATDSISTPLIILSCWLIPISLLASINHLSNYSLLNQRTFISLIIIILTALIITFSSLELSLFYIAFETTLIPTLI  132 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             65999576768999999999999999997999862864218899999999999999999983899999999999999999


Q ss_pred             HHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             88762034454103630002212247899999999999962059899998754310001245555666666665320245
Q gi|254780865|r  155 LIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVH  234 (666)
Q Consensus       155 Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (666)
T Consensus       133 LI~~wG~~~~r~~A~~~~~~yt~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~-----------------------~~~  189 (460)
T MTH00044        133 LISRWGAQKERYQASLYFLFYTLFGSLPLLISLIAIYVSSSSLSIPSVNLNWNF-----------------------TSS  189 (460)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------------------HHC
T ss_conf             998839987999999999999999899999999999998487519999999887-----------------------534


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q ss_conf             531799999999999865433432343124000-0233221000134566667779999630135--7813444456777
Q gi|254780865|r  235 PHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFE--LSPFVLDCITVLG  311 (666)
Q Consensus       235 ~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~--~~~~~~~~~~~~g  311 (666)
T Consensus       190 ~~~~~~~~~l~~~laF~vK~pl~P~H~WLP~Ah~eAP~~~SmlL-AgvllKlG~YgliR~~~~~~~~~~~~~~~~l~~l~  268 (460)
T MTH00044        190 PTSLTSIWWLFCFLAFLVKMPIYGFHLWLPKAHVEAPVAGSMIL-AAILLKLGGYGLIRLISLFSTPSLNNLSFPLITFC  268 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf             16699999999999999973687601237264353980699999-99999999999999999863056899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             778876300111024520244321000135334456553---11100346555310001222210123211100001101
Q gi|254780865|r  312 CITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRR  388 (666)
Q Consensus       312 ~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~  388 (666)
T Consensus       269 ~~g~~~~s~~al~Q~DlKrliAYSSVsHmG~v~~gi~~~~~~g~~Gal~~miaHgl~ss~LF~lag~-~y~rt~tr~i~~  347 (460)
T MTH00044        269 IWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANT-LYERSGTRTLAI  347 (460)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEHHH
T ss_conf             9999999999998647529999933998999999999705889999999999999999999999889-997038673787


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             27761546699999998864210110000000024432178888889864102444442102211345433310342457
Q gi|254780865|r  389 MGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFF  468 (666)
Q Consensus       389 ~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~  468 (666)
T Consensus       348 ~~Gl~~~~P~~~~~~~i~~la~~glP------p~~gF~gE~~i~~s~~~~~~--~~~~~~~~~~~lta~Y~L~~~~~~~~  419 (460)
T MTH00044        348 TRGLKLITPLLTLWWLITCAANLGLP------PLPNLIGELLIISSIIDWNI--LSFPIIGLATVFGAIYSLLIYQLTNS  419 (460)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             38816563799999999999975164------34609999999999999989--99999999999999999999999867


Q ss_pred             CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             87443321000000135533320245656663210000012
Q gi|254780865|r  469 GKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDV  509 (666)
Q Consensus       469 G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~  509 (666)
T Consensus       420 G~~~~~~~---~~~~~~~rE~~~l~~h~~p~~~l~~~P~~i  457 (460)
T MTH00044        420 GTFPSFIS---NISPITSREHLLIFLHLLPLILIIINPSLI  457 (460)
T ss_pred             CCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf             99810143---389985789999999999999999786888