HHsearch alignment for GI: 254780865 and conserved domain: MTH00044
>MTH00044 ND4 NADH dehydrogenase subunit 4; Validated.
Probab=100.00 E-value=0 Score=580.63 Aligned_cols=397 Identities=19% Similarity=0.265 Sum_probs=335.3
Q ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3577874337899999999999999999747530688--86618999999999999999865589999888888568899
Q gi|254780865|r 77 IPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDP--HRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYL 154 (666)
Q Consensus 77 ~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~--~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~ 154 (666)
T Consensus 53 ~~~~~~~D~lS~~lilLt~~l~~l~~laS~~~l~~~~~~~~~~f~~lll~l~~~l~~~F~s~dl~~fyiffE~~lIp~~~ 132 (460)
T MTH00044 53 LSLSLATDSISTPLIILSCWLIPISLLASINHLSNYSLLNQRTFISLIIIILTALIITFSSLELSLFYIAFETTLIPTLI 132 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65999576768999999999999999997999862864218899999999999999999983899999999999999999
Q ss_pred HHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88762034454103630002212247899999999999962059899998754310001245555666666665320245
Q gi|254780865|r 155 LIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVH 234 (666)
Q Consensus 155 Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (666)
T Consensus 133 LI~~wG~~~~r~~A~~~~~~yt~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~-----------------------~~~ 189 (460)
T MTH00044 133 LISRWGAQKERYQASLYFLFYTLFGSLPLLISLIAIYVSSSSLSIPSVNLNWNF-----------------------TSS 189 (460)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------------------HHC
T ss_conf 998839987999999999999999899999999999998487519999999887-----------------------534
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q ss_conf 531799999999999865433432343124000-0233221000134566667779999630135--7813444456777
Q gi|254780865|r 235 PHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFE--LSPFVLDCITVLG 311 (666)
Q Consensus 235 ~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~--~~~~~~~~~~~~g 311 (666)
T Consensus 190 ~~~~~~~~~l~~~laF~vK~pl~P~H~WLP~Ah~eAP~~~SmlL-AgvllKlG~YgliR~~~~~~~~~~~~~~~~l~~l~ 268 (460)
T MTH00044 190 PTSLTSIWWLFCFLAFLVKMPIYGFHLWLPKAHVEAPVAGSMIL-AAILLKLGGYGLIRLISLFSTPSLNNLSFPLITFC 268 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 16699999999999999973687601237264353980699999-99999999999999999863056899999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 778876300111024520244321000135334456553---11100346555310001222210123211100001101
Q gi|254780865|r 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRR 388 (666)
Q Consensus 312 ~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~ 388 (666)
T Consensus 269 ~~g~~~~s~~al~Q~DlKrliAYSSVsHmG~v~~gi~~~~~~g~~Gal~~miaHgl~ss~LF~lag~-~y~rt~tr~i~~ 347 (460)
T MTH00044 269 IWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANT-LYERSGTRTLAI 347 (460)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEHHH
T ss_conf 9999999999998647529999933998999999999705889999999999999999999999889-997038673787
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 27761546699999998864210110000000024432178888889864102444442102211345433310342457
Q gi|254780865|r 389 MGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFF 468 (666)
Q Consensus 389 ~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~ 468 (666)
T Consensus 348 ~~Gl~~~~P~~~~~~~i~~la~~glP------p~~gF~gE~~i~~s~~~~~~--~~~~~~~~~~~lta~Y~L~~~~~~~~ 419 (460)
T MTH00044 348 TRGLKLITPLLTLWWLITCAANLGLP------PLPNLIGELLIISSIIDWNI--LSFPIIGLATVFGAIYSLLIYQLTNS 419 (460)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 38816563799999999999975164------34609999999999999989--99999999999999999999999867
Q ss_pred CCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 87443321000000135533320245656663210000012
Q gi|254780865|r 469 GKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDV 509 (666)
Q Consensus 469 G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~ 509 (666)
T Consensus 420 G~~~~~~~---~~~~~~~rE~~~l~~h~~p~~~l~~~P~~i 457 (460)
T MTH00044 420 GTFPSFIS---NISPITSREHLLIFLHLLPLILIIINPSLI 457 (460)
T ss_pred CCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 99810143---389985789999999999999999786888