HHsearch alignment for GI: 254780865 and conserved domain: MTH00059
>MTH00059 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=96.72 E-value=0.012 Score=33.56 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999865589999888888568899887620344541---0363000221224789999999999996205989999875
Q gi|254780865|r 130 LVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAI---KASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNA 206 (666)
Q Consensus 130 ~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~---~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~ 206 (666)
T Consensus 19 ~~~~~sdsll~FWvfLEL~~LslIP~f-f~~~~~~~~~~~~sll~Yiv~sglSS~Liv~Gll~~----------~l---- 83 (288)
T MTH00059 19 LLCLLSDSLLGFWVFLELCGLSLIPCF-FLSGNSNVLNFYSSLLSYIVMSGISSSLIVSGLLFS----------SL---- 83 (288)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----------HH----
T ss_conf 999984559999999999778787899-704886510023588899998601189999999987----------48----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 43100012455556666666653202455317999999999998654334323431240000233221000134566667
Q gi|254780865|r 207 SHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAG 286 (666)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~G 286 (666)
T Consensus 84 ------------------------------------~~f~ffGl~~KFGlFPF~~WvY~Vf~~~sW~vi~~-iSvv~K~p 126 (288)
T MTH00059 84 ------------------------------------YFFFFFGFCVKFGLFPFMFWVYRVFSNSSWVVIWL-ISVVMKFP 126 (288)
T ss_pred ------------------------------------HHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEE-EHHHHHHH
T ss_conf ------------------------------------99999999999701125655565302787688877-25888768
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 779999630135781344445677777887630011102-45202443210001353344565531
Q gi|254780865|r 287 VFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQ-HDIKRVIAYSTCSQLGYMFVALGCRA 351 (666)
Q Consensus 287 vy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q-~d~Kr~lAySsis~~G~i~~~~g~~~ 351 (666)
T Consensus 127 i---Lf~~f~~~~~--~~~lv~~~c~ltil~c~~l~W~~S~~W~~~WcH~~lSSs~~lvv~~~~~s 187 (288)
T MTH00059 127 V---LFFSFFLQGG--GLELVFVDCFLTILFCGFLFWFYSLSWEYVWCHISLSSSATLVVACFCLS 187 (288)
T ss_pred H---HHHHHHHHCC--CCEEEHHHHHHHHHHHHHHHHEEECCHHHEEEEEEEHHHHHHHHHHHHCC
T ss_conf 9---8866763058--72344288889999886766403078234666777146779999988516