HHsearch alignment for GI: 254780865 and conserved domain: MTH00063
>MTH00063 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=646.05 Aligned_cols=416 Identities=24% Similarity=0.372 Sum_probs=349.9
Q ss_pred EEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31013088223577874337899999999999999999747530688866189999999999999998655899998888
Q gi|254780865|r 67 FPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWE 146 (666)
Q Consensus 67 ~~wi~~~~~~~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE 146 (666)
T Consensus 24 ~~~~~~~~~~~~~~f~fD~~Sl~f~~~V~~Is~~V~~YS~~YM~~d~~~~rF~~ll~lFv~sM~~LV~S~nll~l~lgWE 103 (519)
T MTH00063 24 LSFLSFGGCYWLINFDFDYVTFGVLLMLLICFYYALYYTFHYFGGSYASFLLNKIIVLFVLVMGILVLTGDFLSTLIFWE 103 (519)
T ss_pred EEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89889737648999863963999999999999999999888758999842899999999999999999835999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88568899887620344541036300022122478999999999999620598999987543100012455556666666
Q gi|254780865|r 147 GVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSF 226 (666)
Q Consensus 147 ~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (666)
T Consensus 104 glGl~SylLI~fy-~~~~s~~aa~~t~l~nRiGDv~l~~~i~~~~~~~~~------------------------------ 152 (519)
T MTH00063 104 YLGVVSFFLILFY-DNFLSLRASVVTLVSSRFGDVCLFLLIGLSCWGGSS------------------------------ 152 (519)
T ss_pred HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
T ss_conf 9999999998375-789999999999999999999999999999986238------------------------------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 65320245531799999999999865433432343124000023322100013456666777999963013578134444
Q gi|254780865|r 227 SFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC 306 (666)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~ 306 (666)
T Consensus 153 ------------~~~~~l~~~l~a~tKSAQ~PF~~WLp~AM~aPTPVSALvHSsTlVtAGVyLliR~~~~~~~-~~~~~~ 219 (519)
T MTH00063 153 ------------SFLCGLFFFLVVFTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGF-SWLVYF 219 (519)
T ss_pred ------------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHH
T ss_conf ------------9999999999999872407445656787379991889998899999999999998898606-799999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 56777778876300111024520244321000135334456553111003465553100012222101232111000011
Q gi|254780865|r 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDM 386 (666)
Q Consensus 307 ~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i 386 (666)
T Consensus 220 l~~ig~lT~~~a~~~Al~q~DlKKiIA~STlSQLG~M~~~lglG~~~lA~fHL~~HA~FKAlLFl~aG~vIh~~~~~QDi 299 (519)
T MTH00063 220 FSVCLLLTIFITGVSSLFFNDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQAS 299 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999999999786388999988887999999999827599999999999999999998557999738995156
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 01277615466999999988642101100000000244321788888898641024444421022113454333103424
Q gi|254780865|r 387 RRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLT 466 (666)
Q Consensus 387 ~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~v 466 (666)
T Consensus 300 r~mg~~~~~~p~~~~~~~i~~lsL~G~P------FlsGFySKDlILe~~~-~~~n~~~~~l~~~~~~lT~~YS~RL~~~~ 372 (519)
T MTH00063 300 NCVYSSILYGSWNLFYLFLLVLGLSGVP------FIGVFFSKHFLLSSFS-SVFNVVVLLLVILCVFLSYLYSFRLCLIL 372 (519)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7753865312599999999999984421------6406775599999999-84799999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 57874433210000001355333202456566632100000124676421134554335753332012336889999999
Q gi|254780865|r 467 FFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSS 546 (666)
Q Consensus 467 F~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~i~ 546 (666)
T Consensus 373 ~~~~~~~s--~~--~~~-~f~~s~~-------~v~~~~~~n~~------------------~~~~~~e~~~l~~~~s~~~ 422 (519)
T MTH00063 373 FGVKSSLS--SG--VRN-FFFGSGL-------MVYLWLFLNYY------------------IFLLLDEVVYLSSFISVLL 422 (519)
T ss_pred HCCCCCCC--HH--HHH-HHHHHHH-------HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
T ss_conf 84777741--23--466-8877899-------99999999999------------------9971066764898999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999870
Q gi|254780865|r 547 FIAFFVGFFSAFLMYII 563 (666)
Q Consensus 547 ll~~iiGi~la~lly~~ 563 (666)
T Consensus 423 l~~~~lg~~~g~~~~~~ 439 (519)
T MTH00063 423 LLVQLLGLLVGYMLYCS 439 (519)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999998752