HHsearch alignment for GI: 254780865 and conserved domain: MTH00094
>MTH00094 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=449.30 Aligned_cols=339 Identities=17% Similarity=0.256 Sum_probs=288.6
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87433789999999999999999974753068886618999999999999999865589999888888568899887620
Q gi|254780865|r 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS 160 (666)
Q Consensus 81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~ 160 (666)
T Consensus 40 f~~d~~s~~l~il~~~~~~~~~~~s~~-----~--~~~~~~~~~l~~~li~~F~s~nl~lFYiffE~sLIP~~~LI~~wG 112 (409)
T MTH00094 40 FFFDSFSFLLLIFMSLFILGLVLMSEK-----N--YNLLILSNLLVFICVFFFVSSNLWMLYLFFELSMFPILIMILGYG 112 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 998789999999999999999999833-----0--499999999999999999998999999999999999999999609
Q ss_pred CCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 34454103630002212247899999999999962059899998754310001245555666666665320245531799
Q gi|254780865|r 161 FKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240 (666)
Q Consensus 161 ~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (666)
T Consensus 113 ~q~eR~~A~~y~l~YTl~~SlplL~~i~~~~~~~~~~~~~~~-----------------------------------~~~ 157 (409)
T MTH00094 113 SQIEKINSSYYLIFYAAFFSFPFLFVYFKNFFFLNFVYFDFF-----------------------------------LSW 157 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----------------------------------HHH
T ss_conf 829999999999999999999999999999999742316789-----------------------------------999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999865433432343124000-0233221000134566667779999630135781344445677777887630
Q gi|254780865|r 241 IICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAA 319 (666)
Q Consensus 241 ~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~ 319 (666)
T Consensus 158 ~~~~~l~laFlvK~Plfp~H~WLP~AHvEAP~~gSmiL-AGvLlKlG~YGl~R~~~~~--~~~~~~~~~~l~l~g~v~~s 234 (409)
T MTH00094 158 EMKFILSLMFMVKFPVYFLHLWLPKAHVEAPTTASMLL-AGLLLKLGTAGFLRILGSL--SFVHNNYWILLSLLGMILSS 234 (409)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999996363131237365510883899999-9999989899999999988--79899999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0111024520244321000135334456553---1110034655531000122221012321110000110127761546
Q gi|254780865|r 320 TVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHL 396 (666)
Q Consensus 320 ~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~ 396 (666)
T Consensus 235 l~~l~Q~DlK~liAYSSVsHMg~v~~gl~~~~~~g~~Gal~~mi~HGl~ss~LF~l~g~-~y~r~~sR~i~~~~Gl~~~~ 313 (409)
T MTH00094 235 FCCVFQSDSKSLAAYSSVTHMSFLLLSLVFMSMSGKLSGLLLMLAHGYTSTLMFYFIGE-FYHISKSRLIYFMNSFFNSS 313 (409)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHCCHHHHH
T ss_conf 99998774889999813989999999999960899999899999887777799998858-99823655599869978786
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 69999999886421011000000002443217888888986410244444210221134543331034245787443
Q gi|254780865|r 397 PRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRV 473 (666)
Q Consensus 397 P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~ 473 (666)
T Consensus 314 P~~~~~~~l~~l~n~g~P------p~~~F~sE~lii~s~~~~~~--~~~~~~~~~~~lsa~Ysl~ly~~~~~Gk~~s 382 (409)
T MTH00094 314 MIFSILFSLVFLSNSGIP------PSLSFFSEFLSISNFFSMNK--FSFFFIFFYFIVSFYYSLFLITSSLMGKKFS 382 (409)
T ss_pred HHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999985589------74509999999999999989--9999999999999999999999966687733