HHsearch alignment for GI: 254780865 and conserved domain: MTH00094

>MTH00094 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=449.30  Aligned_cols=339  Identities=17%  Similarity=0.256  Sum_probs=288.6

Q ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             87433789999999999999999974753068886618999999999999999865589999888888568899887620
Q gi|254780865|r   81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS  160 (666)
Q Consensus        81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~  160 (666)
T Consensus        40 f~~d~~s~~l~il~~~~~~~~~~~s~~-----~--~~~~~~~~~l~~~li~~F~s~nl~lFYiffE~sLIP~~~LI~~wG  112 (409)
T MTH00094         40 FFFDSFSFLLLIFMSLFILGLVLMSEK-----N--YNLLILSNLLVFICVFFFVSSNLWMLYLFFELSMFPILIMILGYG  112 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             998789999999999999999999833-----0--499999999999999999998999999999999999999999609


Q ss_pred             CCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             34454103630002212247899999999999962059899998754310001245555666666665320245531799
Q gi|254780865|r  161 FKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA  240 (666)
Q Consensus       161 ~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (666)
T Consensus       113 ~q~eR~~A~~y~l~YTl~~SlplL~~i~~~~~~~~~~~~~~~-----------------------------------~~~  157 (409)
T MTH00094        113 SQIEKINSSYYLIFYAAFFSFPFLFVYFKNFFFLNFVYFDFF-----------------------------------LSW  157 (409)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----------------------------------HHH
T ss_conf             829999999999999999999999999999999742316789-----------------------------------999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999865433432343124000-0233221000134566667779999630135781344445677777887630
Q gi|254780865|r  241 IICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAA  319 (666)
Q Consensus       241 ~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~  319 (666)
T Consensus       158 ~~~~~l~laFlvK~Plfp~H~WLP~AHvEAP~~gSmiL-AGvLlKlG~YGl~R~~~~~--~~~~~~~~~~l~l~g~v~~s  234 (409)
T MTH00094        158 EMKFILSLMFMVKFPVYFLHLWLPKAHVEAPTTASMLL-AGLLLKLGTAGFLRILGSL--SFVHNNYWILLSLLGMILSS  234 (409)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999996363131237365510883899999-9999989899999999988--79899999999999999999


Q ss_pred             HHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0111024520244321000135334456553---1110034655531000122221012321110000110127761546
Q gi|254780865|r  320 TVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHL  396 (666)
Q Consensus       320 ~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~  396 (666)
T Consensus       235 l~~l~Q~DlK~liAYSSVsHMg~v~~gl~~~~~~g~~Gal~~mi~HGl~ss~LF~l~g~-~y~r~~sR~i~~~~Gl~~~~  313 (409)
T MTH00094        235 FCCVFQSDSKSLAAYSSVTHMSFLLLSLVFMSMSGKLSGLLLMLAHGYTSTLMFYFIGE-FYHISKSRLIYFMNSFFNSS  313 (409)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHCCHHHHH
T ss_conf             99998774889999813989999999999960899999899999887777799998858-99823655599869978786


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             69999999886421011000000002443217888888986410244444210221134543331034245787443
Q gi|254780865|r  397 PRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRV  473 (666)
Q Consensus       397 P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~  473 (666)
T Consensus       314 P~~~~~~~l~~l~n~g~P------p~~~F~sE~lii~s~~~~~~--~~~~~~~~~~~lsa~Ysl~ly~~~~~Gk~~s  382 (409)
T MTH00094        314 MIFSILFSLVFLSNSGIP------PSLSFFSEFLSISNFFSMNK--FSFFFIFFYFIVSFYYSLFLITSSLMGKKFS  382 (409)
T ss_pred             HHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999985589------74509999999999999989--9999999999999999999999966687733