HHsearch alignment for GI: 254780865 and conserved domain: MTH00105

>MTH00105 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=383.02  Aligned_cols=329  Identities=16%  Similarity=0.254  Sum_probs=259.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             18999999999999999865589999888888568899887620344541036300022122478999999999999620
Q gi|254780865|r  117 RFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHS  196 (666)
Q Consensus       117 ~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs  196 (666)
T Consensus         5 ~~ll~l~~~~~G~l~~~sS~n~~~l~v~lEl~~ls~~~l~~-~~~~~~s~eaa~KYfli~~~~S~i~L~gi~~~~~~~g~   83 (345)
T MTH00105          5 ILIIILSTLILGTMITMISSHWLLAWIGLEMNMLAIIPILM-KKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQ   83 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999998899999999999999999998-28994289999999999999999999999999999837


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC-CCCCCC
Q ss_conf             5989999875431000124555566666666532024553179999999999986543343234312400002-332210
Q gi|254780865|r  197 VDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSA  275 (666)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~a-PtpvSA  275 (666)
T Consensus        84 ~~~~~~~~~-----------------------------------~~~~li~~~l~~Klg~~PfH~WlPdv~~~~~~~~~~  128 (345)
T MTH00105         84 WTITKITNP-----------------------------------LASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGL  128 (345)
T ss_pred             HHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             578898779-----------------------------------999999999999980341487798999714799999


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf             00134566667779999630135781344445677777887630011102452024432100013533445655311100
Q gi|254780865|r  276 LIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGAS  355 (666)
Q Consensus       276 llhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a  355 (666)
T Consensus       129 ~l-~t~~Kia~l~il~~~~~~~~-----~~il~~~~~lS~i~G~~~al~Q~~lKrlLAYSSIsh~G~ml~~l~~~~-~~~  201 (345)
T MTH00105        129 IL-LTWQKLAPLSILYQISPSIN-----PNLLLTMAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMTAILTYNP-TLT  201 (345)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf             99-99999999999999998730-----999999999999999999986601318999999988999999999849-999


Q ss_pred             HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34655531000122221012321110000110127761546699999998864210110000000024432178888889
Q gi|254780865|r  356 IFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVA  435 (666)
Q Consensus       356 ~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~  435 (666)
T Consensus       202 ~~y~~~Y~~~~~~lf~~~----~-~~~~~~i~~l~gl~~~~p~~~~~~~i~llSLaGiP------P~~GF~~K~~ii~~~  270 (345)
T MTH00105        202 LLNLTIYIIMTLTMFMLL----M-LNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLP------PLTGFMPKWMIIQEL  270 (345)
T ss_pred             HHHHHHHHHHHHHHHHHH----H-HHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHH
T ss_conf             999999999999999999----9-95766299885755313999999999999985322------656899999999999


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf             86410244444210221134543331034245787443321000000135533320245656663
Q gi|254780865|r  436 YTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSI  500 (666)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si  500 (666)
T Consensus       271 i~~~~~-~l~~ilil~S~isl~yYlRii~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  334 (345)
T MTH00105        271 TKNNNI-IMPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPTTLLPTLIILST  334 (345)
T ss_pred             HHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             981849-9999999999999999999999999967999997646117468984189999999999