HHsearch alignment for GI: 254780865 and conserved domain: MTH00124
>MTH00124 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=574.39 Aligned_cols=392 Identities=18% Similarity=0.252 Sum_probs=330.9
Q ss_pred EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 778743378999999999999999997475306888--661899999999999999986558999988888856889988
Q gi|254780865|r 79 WGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPH--RPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLI 156 (666)
Q Consensus 79 ~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~--~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li 156 (666)
T Consensus 54 ~~~g~D~lS~~li~Lt~~i~~l~il~S~~~~~~~~~~~~~~F~~~~l~l~~~l~~~F~s~dl~~FyiffE~~lIp~~lLI 133 (457)
T MTH00124 54 QWLGIDQISAPLLVLSCWLLPLMIMASQNHLQHEPTQRKRTFITTLILLQPFLILAFSATELMLFYIMFEATLIPTLILI 133 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99925887899999999999999999879985274002889999999999999999999589999999999999999999
Q ss_pred HHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 76203445410363000221224789999999999996205989999875431000124555566666666532024553
Q gi|254780865|r 157 GFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236 (666)
Q Consensus 157 ~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (666)
T Consensus 134 ~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gt~~~~~~~~~~~~------------------------~~~~ 189 (457)
T MTH00124 134 TRWGNQPERLNAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHPT------------------------LTNS 189 (457)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------------------------CCCC
T ss_conf 8868958999999999999999899999999999997698629999976242------------------------1241
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHH
Q ss_conf 1799999999999865433432343124000-0233221000134566667779999630135-7813444456777778
Q gi|254780865|r 237 DSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFE-LSPFVLDCITVLGCIT 314 (666)
Q Consensus 237 ~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~-~~~~~~~~~~~~g~~t 314 (666)
T Consensus 190 ~~~~~~~l~~~laF~vK~p~fp~H~WLP~Ah~eAP~~gSmiL-AgvllKlG~YgliR~~~~~~~~~~~~~~~~i~l~l~g 268 (457)
T MTH00124 190 WTNLLLWLALLTAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL-AAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWG 268 (457)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999999999866899888762056433870799999-9999999999999999985156899999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 876300111024520244321000135334456553---11100346555310001222210123211100001101277
Q gi|254780865|r 315 AFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGG 391 (666)
Q Consensus 315 ~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gG 391 (666)
T Consensus 269 ~i~~sl~al~Q~DlKrliAYSSVsHMG~v~~gi~~~~~~g~~Ga~~~miaHgl~ss~LF~lag-~iy~r~~tr~i~~~~G 347 (457)
T MTH00124 269 ALMTSSICLRQTDLKSLIAYSSVSHMGLVIAAILIQTQWSLSGAMILMIAHGLTSSMLFCLAN-TNYERTHSRTLLLTRG 347 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEEHHHHCC
T ss_conf 999999997610199999998999999999999967950068999999989999999999999-9999618715998499
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 61546699999998864210110000000024432178888889864102444442102211345433310342457874
Q gi|254780865|r 392 LYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471 (666)
Q Consensus 392 l~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~ 471 (666)
T Consensus 348 l~~~~P~~~~~~~i~~la~~g~P------p~~gF~gE~lil~~~~~~~~--~~~~~~~~~~~lsa~YsL~l~~~~~~G~~ 419 (457)
T MTH00124 348 LQLLLPLMTTWWLLANLTNMALP------PTINLMGELTIISSLFNWSP--TTIILTGLGTLLTASYTLYMFLSTQRGTL 419 (457)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC------CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 05557889999999999975064------42619999999999999979--99999999999999999999999875998
Q ss_pred CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 433210000001355333202456566632100000
Q gi|254780865|r 472 RVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFH 507 (666)
Q Consensus 472 ~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~ 507 (666)
T Consensus 420 ~~~~~---~~~~~~~re~~~l~~h~~pl~~l~~~p~ 452 (457)
T MTH00124 420 PTHIT---TIQPTHTREHLLMTLHILPLLLLILKPE 452 (457)
T ss_pred HHHCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04124---7899838999999999999999996356