HHsearch alignment for GI: 254780865 and conserved domain: MTH00135
>MTH00135 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=350.50 Aligned_cols=290 Identities=20% Similarity=0.318 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999998655899998888885688998876203445410363000221224789999999999996205989999875
Q gi|254780865|r 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNA 206 (666)
Q Consensus 127 ~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~ 206 (666)
T Consensus 15 lgt~i~~sS~~w~~~w~gLEln~ls~ipLi~~-~~~~~s~Eaa~KYFliqa~aS~~lL~~~~~~~~~tg~~~i~~~~~~- 92 (347)
T MTH00135 15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQ-HHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQLSHP- 92 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 99999999988999999999999999999877-9998389999999999999999999999999999982688877659-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 43100012455556666666653202455317999999999998654334323431240000233221000134566667
Q gi|254780865|r 207 SHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAG 286 (666)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~G 286 (666)
T Consensus 93 ----------------------------------~~~~li~~~l~~Klg~aPfH~W~Pdv~~g~~~~~~~~l~-t~qKia 137 (347)
T MTH00135 93 ----------------------------------LATTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILS-TWQKLA 137 (347)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH-HHHHHH
T ss_conf ----------------------------------999999999999980340886499998389789999999-999999
Q ss_pred HH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 77-99996301357813444456777778876300111024520244321000135334456553111003465553100
Q gi|254780865|r 287 VF-LVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFF 365 (666)
Q Consensus 287 vy-~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a~~~~~~H~~~ 365 (666)
T Consensus 138 p~~ll~~~~~------~~~~~l~~l~~lS~~vG~~~al~Q~~lkrlLAYSSIsh~Gwml~~l~~~~-~~~~~~~~~Y~~~ 210 (347)
T MTH00135 138 PFALILQIAP------TNPTLLITLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSP-SLTLLALLTYIIM 210 (347)
T ss_pred HHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 9999999851------00999999999999999998764341679999998888999999999737-8999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 01222210123211100001101277615466999999988642101100000000244321788888898641024444
Q gi|254780865|r 366 KALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVF 445 (666)
Q Consensus 366 ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~ 445 (666)
T Consensus 211 ~~~~f~~-----~~~~~~~~i~~l~~~~~~~p~~~~~~~i~llSLaGlP------P~~GF~~K~~il~~li~~~~~-~la 278 (347)
T MTH00135 211 TSSAFLT-----FKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLP------PLTGFMPKWLILQELTKQDLP-LTA 278 (347)
T ss_pred HHHHHHH-----HHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHCCHH-HHH
T ss_conf 9999999-----9983735898875614201999999999999985321------666899999999999982849-999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 421022113454333103424578744
Q gi|254780865|r 446 FLLLFAAFLTSFYSWRLMFLTFFGKMR 472 (666)
Q Consensus 446 ~~~~~~~~lt~~Y~~r~~~~vF~G~~~ 472 (666)
T Consensus 279 ~i~il~SlislfyYlRi~y~~~~~~~p 305 (347)
T MTH00135 279 TLAALSALLSLYFYLRLCYAMTLTISP 305 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999999999999971899