HHsearch alignment for GI: 254780865 and conserved domain: MTH00135

>MTH00135 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=350.50  Aligned_cols=290  Identities=20%  Similarity=0.318  Sum_probs=241.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             99999998655899998888885688998876203445410363000221224789999999999996205989999875
Q gi|254780865|r  127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNA  206 (666)
Q Consensus       127 ~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~  206 (666)
T Consensus        15 lgt~i~~sS~~w~~~w~gLEln~ls~ipLi~~-~~~~~s~Eaa~KYFliqa~aS~~lL~~~~~~~~~tg~~~i~~~~~~-   92 (347)
T MTH00135         15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQ-HHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQLSHP-   92 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             99999999988999999999999999999877-9998389999999999999999999999999999982688877659-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             43100012455556666666653202455317999999999998654334323431240000233221000134566667
Q gi|254780865|r  207 SHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAG  286 (666)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~G  286 (666)
T Consensus        93 ----------------------------------~~~~li~~~l~~Klg~aPfH~W~Pdv~~g~~~~~~~~l~-t~qKia  137 (347)
T MTH00135         93 ----------------------------------LATTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILS-TWQKLA  137 (347)
T ss_pred             ----------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH-HHHHHH
T ss_conf             ----------------------------------999999999999980340886499998389789999999-999999


Q ss_pred             HH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf             77-99996301357813444456777778876300111024520244321000135334456553111003465553100
Q gi|254780865|r  287 VF-LVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFF  365 (666)
Q Consensus       287 vy-~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a~~~~~~H~~~  365 (666)
T Consensus       138 p~~ll~~~~~------~~~~~l~~l~~lS~~vG~~~al~Q~~lkrlLAYSSIsh~Gwml~~l~~~~-~~~~~~~~~Y~~~  210 (347)
T MTH00135        138 PFALILQIAP------TNPTLLITLGLLSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSP-SLTLLALLTYIIM  210 (347)
T ss_pred             HHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf             9999999851------00999999999999999998764341679999998888999999999737-8999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             01222210123211100001101277615466999999988642101100000000244321788888898641024444
Q gi|254780865|r  366 KALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVF  445 (666)
Q Consensus       366 ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~  445 (666)
T Consensus       211 ~~~~f~~-----~~~~~~~~i~~l~~~~~~~p~~~~~~~i~llSLaGlP------P~~GF~~K~~il~~li~~~~~-~la  278 (347)
T MTH00135        211 TSSAFLT-----FKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLP------PLTGFMPKWLILQELTKQDLP-LTA  278 (347)
T ss_pred             HHHHHHH-----HHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHCCHH-HHH
T ss_conf             9999999-----9983735898875614201999999999999985321------666899999999999982849-999


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             421022113454333103424578744
Q gi|254780865|r  446 FLLLFAAFLTSFYSWRLMFLTFFGKMR  472 (666)
Q Consensus       446 ~~~~~~~~lt~~Y~~r~~~~vF~G~~~  472 (666)
T Consensus       279 ~i~il~SlislfyYlRi~y~~~~~~~p  305 (347)
T MTH00135        279 TLAALSALLSLYFYLRLCYAMTLTISP  305 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999999999999971899