HHsearch alignment for GI: 254780865 and conserved domain: MTH00144
>MTH00144 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=369.64 Aligned_cols=302 Identities=20% Similarity=0.296 Sum_probs=251.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHH
Q ss_conf 88866189999999999999998655899998888885688998876203445410363000221224789999999999
Q gi|254780865|r 112 DPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAII 191 (666)
Q Consensus 112 ~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~ 191 (666)
T Consensus 2 ~~~~p~~~~f~~l~~~g~~~~~ss~~~~~l~v~lEl~sl~~~~Li~~~-~~~~s~eaa~KYfl~~~~~S~~~L~gi~l~y 80 (329)
T MTH00144 2 NKMSPSNLLFLFVMLMGTLLSLSSSHWLGVWVGLELNLIGFLPLLNIK-GKSSEKESSMKYFIIQSLGSSLLIMGSVIMY 80 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988879999999999999999999899999999999999999999759-9963899999999999999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
Q ss_conf 99620598999987543100012455556666666653202455317999999999998654334323431240000233
Q gi|254780865|r 192 YLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPT 271 (666)
Q Consensus 192 ~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPt 271 (666)
T Consensus 81 ~~~g~~~~~------------------------------------------~~li~~gl~~Klg~~PfH~Wlpdv~~~~~ 118 (329)
T MTH00144 81 NMSFSSSFF------------------------------------------SLLLLSGLVLKLGGFPFHFWVPSVTKGLS 118 (329)
T ss_pred HHHHCHHHH------------------------------------------HHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 988566999------------------------------------------99999999998754417640788981487
Q ss_pred CCCCCHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 22100013456666777-99996301357813444456777778876300111024520244321000135334456553
Q gi|254780865|r 272 PVSALIHAATMVTAGVF-LVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR 350 (666)
Q Consensus 272 pvSAllhs~~mv~~Gvy-~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~ 350 (666)
T Consensus 119 ~~~~~~l~t~-~Ki~~~~~l~~~~~----~~~~~~~l~~l~~lS~iiG~l~al~q~~iKrlLAYSSI~~~G~ml~~i~~~ 193 (329)
T MTH00144 119 WLSLFLMLTW-QKVAPLFLLSLILD----LNLLLMSLMVISVLSAIVGSIGGLNQTSVRLMLAYSSISHLGWMLSGILIG 193 (329)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999-99999999999961----210799999999999999999987442132788986898899999999986
Q ss_pred CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 11100346555310001222210123211100001101277615466999999988642101100000000244321788
Q gi|254780865|r 351 AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDI 430 (666)
Q Consensus 351 ~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~ 430 (666)
T Consensus 194 ~-~~~~~y~~~y~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~lSlaGiP------P~~GF~~K~~ 258 (329)
T MTH00144 194 S-SLMWGYFLIYSLSLGFLFYSL--------SGGDCLSMKSLTSLNPSNNLSISLLLLSLGGLP------PFLGFLSKLL 258 (329)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_conf 9-999999999999999999999--------987999998798871999999999999998654------7877999999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 88889864102444442102211345433310342457874433210
Q gi|254780865|r 431 ILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDI 477 (666)
Q Consensus 431 il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~ 477 (666)
T Consensus 259 il~~~~~~~~~-~l~~i~ll~S~is~~yYlri~~~~~~~~~~~~~~~ 304 (329)
T MTH00144 259 VLLSSMEMNMI-LLIVALILGSLISLYFYLNFFYSLVIKSYFLSNST 304 (329)
T ss_pred HHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999985859-99999999999999999999999998679999845