HHsearch alignment for GI: 254780865 and conserved domain: MTH00165

>MTH00165 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00  E-value=0  Score=840.58  Aligned_cols=536  Identities=32%  Similarity=0.545  Sum_probs=475.6

Q ss_pred             EEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31013088223577874337899999999999999999747530688866189999999999999998655899998888
Q gi|254780865|r   67 FPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWE  146 (666)
Q Consensus        67 ~~wi~~~~~~~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE  146 (666)
T Consensus        34 ~~~~~~~~~~~~~~~~~D~~S~~f~~~v~~Is~~V~~yS~~YM~~d~~~~rF~~~l~lFv~sM~~lv~s~nl~~l~lgWE  113 (571)
T MTH00165         34 WELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGWD  113 (571)
T ss_pred             EEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             44201267063887734852899999999999999999889837999842899999999999999999804999999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88568899887620344541036300022122478999999999999620598999987543100012455556666666
Q gi|254780865|r  147 GVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSF  226 (666)
Q Consensus       147 ~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (666)
T Consensus       114 glGl~SylLI~fy-~~~~s~~a~~~t~l~nRiGD~~ll~~i~~~~-~~gs~~~~~~~~~~--------------------  171 (571)
T MTH00165        114 GLGLVSYCLVIYY-QNVKSYNAGMLTALSNRIGDVAILLSIAWML-NFGSWNFIFYLDSM--------------------  171 (571)
T ss_pred             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHH--------------------
T ss_conf             9999999998136-8868999999999999876999999999999-95772699998763--------------------


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             65320245531799999999999865433432343124000023322100013456666777999963013578134444
Q gi|254780865|r  227 SFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC  306 (666)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~  306 (666)
T Consensus       172 -------~~~~~~~~~~~ll~laa~~KSAQ~Pfh~WLP~AM~aPTPVSALvHssTlVtAGvylliR~~~~~~~~-~~~~~  243 (571)
T MTH00165        172 -------SNSFEMLLIGFLIILAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNPLLSGS-FFSKL  243 (571)
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHH
T ss_conf             -------0330899999999999988732177622116764589728999987689988899999988985216-89999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             56777778876300111024520244321000135334456553111003465553100012222101232111000011
Q gi|254780865|r  307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDM  386 (666)
Q Consensus       307 ~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i  386 (666)
T Consensus       244 l~~ig~~T~l~a~~~Al~q~DiKkiiAyST~SQlG~M~~~~glg~~~la~fHl~~HA~fKAlLFl~aG~vIh~~~~~qDi  323 (571)
T MTH00165        244 LLLISSLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFYKLAFFHLLTHALFKALLFMCAGVIIHSMGGSQDI  323 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             99999999999999999764077898987898999999999805599999999999999999998332999972797308


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             01277615466999999988642101100000000244321788888898641024444421022113454333103424
Q gi|254780865|r  387 RRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLT  466 (666)
Q Consensus       387 ~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~v  466 (666)
T Consensus       324 r~mggl~~~~P~t~~~~~i~~lsL~G~P------flsGFySKD~IlE~~~~~~~~~~~~~~~~~~~~lT~~YS~Rl~~~~  397 (571)
T MTH00165        324 RFMGGLSKSMPLTSSCFNVSNLALCGFP------FLAGFYSKDLILEMVFMSNLNMFSFLLFIFSTGLTVSYSFRLMYYS  397 (571)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8866965424699999999999985350------5418988899999998744559999999999997899999999999


Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             57874433210000001355333202456566632100000124676421134554335753332012336889999999
Q gi|254780865|r  467 FFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSS  546 (666)
Q Consensus       467 F~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~i~  546 (666)
T Consensus       398 ~~~~~~~~--~~~~~~~~~~~m~~pl~~L~~~si~~G~~~~~~~~~~~-------------------~~~~l~~~~K~l~  456 (571)
T MTH00165        398 MTGDFNLS--SLNNLSDESYIMLKSMILLLFMSIFGGSFLSWLIFPNP-------------------YMICLPFYLKLLT  456 (571)
T ss_pred             HHCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHH
T ss_conf             81899898--78618889898999999999999999999999982656-------------------2215329999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             99999999999999870401246656411258999870578168999999999999999999987557-66534154999
Q gi|254780865|r  547 FIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLS-IDKYGPGGIVA  625 (666)
Q Consensus       547 ll~~iiGi~la~lly~~~~~~~~~~~~~~~~l~~~l~~~~y~d~lY~~~ivk~~~~ls~~l~~~~D~~-i~d~~v~gi~~  625 (666)
T Consensus       457 ~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~f~~~mwfl~~l~~~~~~~~~~~~~~~~~k~~D~gw~E~~g~~Gi~~  535 (571)
T MTH00165        457 LFVILLGGLLGYLLSLFSLSFL-LKSLNYYKLSSFLGSMWFMPFLSTYGISYLPLNLGYSSFKNFDQGWSEYFGGQGLYN  535 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999987335-454566799999997446398888788899999999999999976999862569999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999988509628899999999999999999
Q gi|254780865|r  626 CVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVM  660 (666)
Q Consensus       626 ~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~~  660 (666)
T Consensus       536 ~~~~~s~~~~~~q~~~i~~Y~~~~~~~~~~~~~~l  570 (571)
T MTH00165        536 SLKKLSKFLQWLQMNNLKIYLLSFLLWIIILFLLL  570 (571)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999985789999999999999999997