HHsearch alignment for GI: 254780865 and conserved domain: MTH00205
>MTH00205 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=565.10 Aligned_cols=401 Identities=18% Similarity=0.226 Sum_probs=340.3
Q ss_pred EECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13088223577874337899999999999999999747530688866189999999999999998655899998888885
Q gi|254780865|r 70 IIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVG 149 (666)
Q Consensus 70 i~~~~~~~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~ 149 (666)
T Consensus 43 ~~~~~~~is~~~~~D~lS~~li~Lt~~i~~l~~l~S~~~~~~~~~~~~f~~l~lll~~~li~~F~s~dll~FyiffE~~L 122 (452)
T MTH00205 43 ISLGESSISSSFSVDSVSLPLIMLSFWISVLMILSSFFILKSSNNSSLFTVTVIMLCLILILSFSSDNLLLFYILFEASL 122 (452)
T ss_pred CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12042213488810172599999999999999998779986462057999999999999999999978999999999999
Q ss_pred HHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899887620344541036300022122478999999999999620598999987543100012455556666666653
Q gi|254780865|r 150 LASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFF 229 (666)
Q Consensus 150 l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (666)
T Consensus 123 IP~~lLI~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~--------------------- 181 (452)
T MTH00205 123 IPTLILIMVWGYQPERLQASMYMLLYTLFASLPLLIGIIFFSDLNFHSSMFFMMDMGIG--------------------- 181 (452)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------
T ss_conf 99999998709987899999999999999899999999999999299519999988764---------------------
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q ss_conf 20245531799999999999865433432343124000-023322100013456666777999963-0135781344445
Q gi|254780865|r 230 GIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFELSPFVLDCI 307 (666)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~~~~~~~~~~ 307 (666)
T Consensus 182 ---~~~~~~~~~~~~~~~laF~vK~Plfp~H~WLP~Ah~eAP~~~S~il-agvllK~G~ygl~R~~~~~~~~~~~~~~~~ 257 (452)
T MTH00205 182 ---WSSDLVLSLYWIFCMLAFLVKMPLYLTHLWLPKAHVEAPVSGSMIL-AGVLLKLGGYGLIRVSMILYSVNYKVSELF 257 (452)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---4416899999999999999860150150307353253981899999-999998618899999887304589999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 6777778876300111024520244321000135334456553---1110034655531000122221012321110000
Q gi|254780865|r 308 TVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQ 384 (666)
Q Consensus 308 ~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~ 384 (666)
T Consensus 258 ~~l~~~~~~~~~~~al~Q~D~K~liAYSSvshmG~v~~g~~~~~~~g~~ga~~~mi~Hgl~s~~LF~lag~-~y~r~~tR 336 (452)
T MTH00205 258 FSVSLLGGVMTSMICLRQSDLKSLIAYSSVGHMGLMVVGVVSMTSWGYNGAIIMMVAHGLCSSGMFCLANN-WYERSNSR 336 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCH
T ss_conf 99999999999999999987889999943999818999999872999999999999999888999997515-67444869
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 11012776154669999999886421011000000002443217888888986410244444210221134543331034
Q gi|254780865|r 385 DMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMF 464 (666)
Q Consensus 385 ~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~ 464 (666)
T Consensus 337 ~i~~~~Gl~~~~P~~~~~~~l~~~~n~g~P------p~~nF~gE~~i~~~~~~~~~--~~~~~~~~~~~lsa~Ysl~l~~ 408 (452)
T MTH00205 337 SMMMTKGMLNIFPSLVLFWFLLFSCNMSAP------PSINLLSEIGLAMSLLSSSK--VSGVPLALISFFVGVYSMYLYS 408 (452)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988849838788999999999999987255------12619999999999999879--9999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 2457874433210000001355333202456566632100000
Q gi|254780865|r 465 LTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFH 507 (666)
Q Consensus 465 ~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~ 507 (666)
T Consensus 409 ~~~~G~~~~~~~~~~---~~~~re~~~l~~h~~Pl~~l~l~p~ 448 (452)
T MTH00205 409 QSSHGSVSSQFSSFL---EIKEVEYFVGALHWFPLFILILVPK 448 (452)
T ss_pred HHHCCCCHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 975699835300389---9726799999999999999998488