HHsearch alignment for GI: 254780865 and conserved domain: MTH00205

>MTH00205 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=565.10  Aligned_cols=401  Identities=18%  Similarity=0.226  Sum_probs=340.3

Q ss_pred             EECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13088223577874337899999999999999999747530688866189999999999999998655899998888885
Q gi|254780865|r   70 IIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVG  149 (666)
Q Consensus        70 i~~~~~~~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~  149 (666)
T Consensus        43 ~~~~~~~is~~~~~D~lS~~li~Lt~~i~~l~~l~S~~~~~~~~~~~~f~~l~lll~~~li~~F~s~dll~FyiffE~~L  122 (452)
T MTH00205         43 ISLGESSISSSFSVDSVSLPLIMLSFWISVLMILSSFFILKSSNNSSLFTVTVIMLCLILILSFSSDNLLLFYILFEASL  122 (452)
T ss_pred             CCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12042213488810172599999999999999998779986462057999999999999999999978999999999999


Q ss_pred             HHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68899887620344541036300022122478999999999999620598999987543100012455556666666653
Q gi|254780865|r  150 LASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFF  229 (666)
Q Consensus       150 l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (666)
T Consensus       123 IP~~lLI~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~---------------------  181 (452)
T MTH00205        123 IPTLILIMVWGYQPERLQASMYMLLYTLFASLPLLIGIIFFSDLNFHSSMFFMMDMGIG---------------------  181 (452)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------
T ss_conf             99999998709987899999999999999899999999999999299519999988764---------------------


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHH
Q ss_conf             20245531799999999999865433432343124000-023322100013456666777999963-0135781344445
Q gi|254780865|r  230 GIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFELSPFVLDCI  307 (666)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~~~~~~~~~~  307 (666)
T Consensus       182 ---~~~~~~~~~~~~~~~laF~vK~Plfp~H~WLP~Ah~eAP~~~S~il-agvllK~G~ygl~R~~~~~~~~~~~~~~~~  257 (452)
T MTH00205        182 ---WSSDLVLSLYWIFCMLAFLVKMPLYLTHLWLPKAHVEAPVSGSMIL-AGVLLKLGGYGLIRVSMILYSVNYKVSELF  257 (452)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---4416899999999999999860150150307353253981899999-999998618899999887304589999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCC
Q ss_conf             6777778876300111024520244321000135334456553---1110034655531000122221012321110000
Q gi|254780865|r  308 TVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQ  384 (666)
Q Consensus       308 ~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~  384 (666)
T Consensus       258 ~~l~~~~~~~~~~~al~Q~D~K~liAYSSvshmG~v~~g~~~~~~~g~~ga~~~mi~Hgl~s~~LF~lag~-~y~r~~tR  336 (452)
T MTH00205        258 FSVSLLGGVMTSMICLRQSDLKSLIAYSSVGHMGLMVVGVVSMTSWGYNGAIIMMVAHGLCSSGMFCLANN-WYERSNSR  336 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCH
T ss_conf             99999999999999999987889999943999818999999872999999999999999888999997515-67444869


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             11012776154669999999886421011000000002443217888888986410244444210221134543331034
Q gi|254780865|r  385 DMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMF  464 (666)
Q Consensus       385 ~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~  464 (666)
T Consensus       337 ~i~~~~Gl~~~~P~~~~~~~l~~~~n~g~P------p~~nF~gE~~i~~~~~~~~~--~~~~~~~~~~~lsa~Ysl~l~~  408 (452)
T MTH00205        337 SMMMTKGMLNIFPSLVLFWFLLFSCNMSAP------PSINLLSEIGLAMSLLSSSK--VSGVPLALISFFVGVYSMYLYS  408 (452)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             988849838788999999999999987255------12619999999999999879--9999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             2457874433210000001355333202456566632100000
Q gi|254780865|r  465 LTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFH  507 (666)
Q Consensus       465 ~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~  507 (666)
T Consensus       409 ~~~~G~~~~~~~~~~---~~~~re~~~l~~h~~Pl~~l~l~p~  448 (452)
T MTH00205        409 QSSHGSVSSQFSSFL---EIKEVEYFVGALHWFPLFILILVPK  448 (452)
T ss_pred             HHHCCCCHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             975699835300389---9726799999999999999998488