HHsearch alignment for GI: 254780865 and conserved domain: PRK06459
>PRK06459 hydrogenase 4 subunit B; Validated.
Probab=100.00 E-value=0 Score=648.43 Aligned_cols=515 Identities=17% Similarity=0.235 Sum_probs=365.4
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87433789999999999999999974753068886618999999999999999865589999888888568899887620
Q gi|254780865|r 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS 160 (666)
Q Consensus 81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~ 160 (666)
T Consensus 39 ~~~~pl~~ff~iii~~v~~~~~~ySi~Y~~~~~---~~~~l~~lFi~sMllvv~a~n~~~F~v~WElMsL~Sy~LI~~~~ 115 (578)
T PRK06459 39 IQEYPYLSFFYIIAGLVWVLASLYSLSYDYYGK---WLSMLYSLTVLGMIIVLTSDNYLEFLAGWETMTIPSYVIIALYR 115 (578)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 982749999999999999999999211442515---99999999999999999973099999999999999999999705
Q ss_pred CCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 34454103630002212247899999999999962059899998754310001245555666666665320245531799
Q gi|254780865|r 161 FKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240 (666)
Q Consensus 161 ~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (666)
T Consensus 116 ~~---~~aa~~y~~~~~~G~~~ll~~~~ll~~~~Gs~~f~~~~~~----------------------------------- 157 (578)
T PRK06459 116 KD---WKPAFTFMAFGELSTVLILAGFALAYSQTGSFNFERLSTQ----------------------------------- 157 (578)
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHH-----------------------------------
T ss_conf 55---0078999999999999999999999998088248877878-----------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999865433432343--124000-02332210001345666677799996301357813444456777778876
Q gi|254780865|r 241 IICLLFFLGAMGKSAQLLLHV--WLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFF 317 (666)
Q Consensus 241 ~~~~l~~~g~~~K~a~~P~h~--WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~ 317 (666)
T Consensus 158 ~~~lL~~~GFg~KaG~~Pfhvh~WLP~Ah~~aPs~vSal~-Sg~m~k~gvyg~~r~~~l~~~~~~~g~~~~~~G~~s~~~ 236 (578)
T PRK06459 158 VPLIITSFGFIIKMGMFPFLVSEWLPIAHGNAPSNASAVL-SATMTLMGVYGILKMESLSPVSPYLGIFLLAIGAFSILF 236 (578)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998510510333117401178995799999-999999999999999996035359999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC-----------CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 300111024520244321000135334456553-----------111003465553100012222101232111000011
Q gi|254780865|r 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR-----------AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDM 386 (666)
Q Consensus 318 g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~-----------~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i 386 (666)
T Consensus 237 G~l~A~~q~D~KrlLAYSsi~niG~i~~~lGl~~~~~~~~l~~~~~~a~l~h~~nHa~fK~lLFl~aG~v~~~-~~~~~~ 315 (578)
T PRK06459 237 GALYSYVSDHVKGLLAFSTIENNGAILVALGLYLELVSSDLREFVLFTVIIYSIAHSLAKTGLFLSSGYVEGE-YLTTAR 315 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HCCCCH
T ss_conf 9999998762899998834998899999999999814505799999999999999999999999710638998-625525
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C-------CCCCCHHHHHHHHH
Q ss_conf 01277615466999999988642101100000000244321788888898641024--4-------44421022113454
Q gi|254780865|r 387 RRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFT--F-------VFFLLLFAAFLTSF 457 (666)
Q Consensus 387 ~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~--~-------~~~~~~~~~~lt~~ 457 (666)
T Consensus 316 ~~~~gl------t~~~~lig~~sisglP------P~nGFvseWli~qs~~~~~~~~~~~~~~~~~~~~~~lAlt~ala~~ 383 (578)
T PRK06459 316 SFEYGL------SVLGAVLLAMSLSGLL------PTIGGVATWMLLESLFMEAYTLPHFIGILPIIAGAMIAMGEGLATG 383 (578)
T ss_pred HHCCCH------HHHHHHHHHHHHHCCC------CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 640678------9999999999996299------8555889999999999705553138999999999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 33310342457874433210000001355333202456566632100000124676421134554335753332012336
Q gi|254780865|r 458 YSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHE 537 (666)
Q Consensus 458 Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 537 (666)
T Consensus 384 ~~vk~~g~~fl~~pr~--~~a~~a~e~p~~~~~~~~~ll~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~-- 455 (578)
T PRK06459 384 SLIKYISYTQLFRPIK--DHASKIKQGPILAVGLIVLILTVG--LAYLISPFRTGVSSLGVGLNSLIESQYQR--SDF-- 455 (578)
T ss_pred HHHHHHHHEECCCCCC--HHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCC--
T ss_conf 9999997100188997--567744015589999999999999--99863688877777520344111464332--333--
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999999-9999987040124665641125899987057816899999999999999999998755766
Q gi|254780865|r 538 VPLWVEYSSFIAFFVGFF-SAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLSID 616 (666)
Q Consensus 538 ~~l~~~~i~ll~~iiGi~-la~lly~~~~~~~~~~~~~~~~l~~~l~~~~y~d~lY~~~ivk~~~~ls~~l~~~~D~~i~ 616 (666)
T Consensus 456 ~--~i~pl~~l~~~~~~~l~~~~~~~~~-r~R~~~~W~CG~~~~~qyta~~Faqpir~if~~l~r~~~~~~~~~~D~fw~ 532 (578)
T PRK06459 456 G--GISPLYIIALIPIFSLISYLSFGKP-KIRVAEPWNNGSSQGERYTSFAMANNIRLMLRKLLRTKTGSLETSIDVFWE 532 (578)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHCCCC-CCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 1--5579999999999999999980899-872699866789864342412421309999898635533468876338999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5341549999999999998850962889999999999999999998
Q gi|254780865|r 617 KYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVMLL 662 (666)
Q Consensus 617 d~~v~gi~~~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~~ll 662 (666)
T Consensus 533 -~ly~l~~~~~~~~~~~~~~lQ~G~i~~YllYif~tLvvlLivv~v 577 (578)
T PRK06459 533 -AMLVLIRWYRKFSKTFSRKFMNSSLSWYMIYMILALVVVIIIVVV 577 (578)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -987999999999999998704896899999999999999999996