HHsearch alignment for GI: 254780865 and conserved domain: PRK06525
>PRK06525 hydrogenase 4 subunit D; Validated.
Probab=100.00 E-value=0 Score=711.96 Aligned_cols=461 Identities=31% Similarity=0.447 Sum_probs=389.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 92079899999999999999730124214789999999999999999999997258985289997531013088223577
Q gi|254780865|r 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG 80 (666)
Q Consensus 1 M~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~ 80 (666)
T Consensus 1 M~~L~ll~illPll~a~l~~~l~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~ 71 (480)
T PRK06525 1 MENLALLTLLLPFIGALVVSFLPGRRA----AELGVLFAALATLCMLVLISAFYQAGKVA-VTLTLVNVGD----VALFG 71 (480)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCC----CCCEE
T ss_conf 956999999999999999999843689----99999999999999999999998489851-7887530356----65225
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 874337899999999999999999747530688-------8661899999999999999986558999988888856889
Q gi|254780865|r 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDP-------HRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASY 153 (666)
Q Consensus 81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~-------~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy 153 (666)
T Consensus 72 l~~D~ls~~~~~l~~~~~~l~~lys~~y~~~~~~~~~~~~~~~~f~~~~ll~~~~~~g~~~s~dl~~~fvf~E~~~i~sy 151 (480)
T PRK06525 72 LVIDPVSVLILFVVVFLGLLVTIYSTGYMSPKNREHPVHEGTNRYYAFLLLFIGAMAGLVLSSTLLGLLLFFEITGLCSW 151 (480)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67757679999999999999999999971222333657654418999999999999999998079999999999999999
Q ss_pred HHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98876203445410363000221224789999999999996205989999875431000124555566666666532024
Q gi|254780865|r 154 LLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDV 233 (666)
Q Consensus 154 ~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (666)
T Consensus 152 ~Li~~~-~~~~~~~aa~ky~i~~~~gs~~~l~gi~~ly~~~gt~~~~~l~~~---------------------------- 202 (480)
T PRK06525 152 ALISYY-QSDKAQRSALKALLITHIGSLGLYLAAATLFLQTGSFALSALSGL---------------------------- 202 (480)
T ss_pred HHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC----------------------------
T ss_conf 999375-878999999999999999999999999999986887389998715----------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q ss_conf 55317999999999998654334323431240000233221000134566667779999630-13578134444567777
Q gi|254780865|r 234 HPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSP-LFELSPFVLDCITVLGC 312 (666)
Q Consensus 234 ~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~Gvy~l~r~~~-~~~~~~~~~~~~~~~g~ 312 (666)
T Consensus 203 -~~~~~~~~~~~~l~~~~~K~~~~P~H~WLPda~~ap~pvsa~L~~~~~~k~g~y~l~r~~~~~~~~~~~~~~~l~~lg~ 281 (480)
T PRK06525 203 -HGDLKLLVFGGILFAAWGKSAQLPLQAWLPDAMEAPTPVSAYLHAASMVKVGVYIFARAILDGGNIPHVIGYVGMVMAI 281 (480)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -7248999999999999999715457344775346897588899999999999999999999733149999999999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC------CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 78876300111024520244321000135334456553------111003465553100012222101232111000011
Q gi|254780865|r 313 ITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR------AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDM 386 (666)
Q Consensus 313 ~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~------~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i 386 (666)
T Consensus 282 ~t~~~g~~~Al~Q~d~KrlLAYSSisq~G~i~~gi~~~~~g~~~~~~g~l~~~i~H~~~k~~LFl~aG~i~~-~~gt~~i 360 (480)
T PRK06525 282 VTMLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLSIFGSRLALEGSIAHIFNHAFAKSLFFLVAGALSY-SCGTRLL 360 (480)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCH
T ss_conf 999999999998521106788869999999999999713565899999999999999999999999989998-7089737
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCHHHHHHHHHHHHHC
Q ss_conf 0127761546699999998864210110000000024432178888889864102444----442102211345433310
Q gi|254780865|r 387 RRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFV----FFLLLFAAFLTSFYSWRL 462 (666)
Q Consensus 387 ~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~----~~~~~~~~~lt~~Y~~r~ 462 (666)
T Consensus 361 ~~l~Gl~~~~P~~a~~f~i~~lsl~GiP------p~~GF~sK~~i~~~~~~~~~~~~~~~~~~~~~~i~s~~~~~y~~~~ 434 (480)
T PRK06525 361 PRLRGVLKKMPLVGVGFCVAALAITGVP------PFNGFFSKFPIFAGGFELSVEYWILLPAMILLLIESVASFAWFLRW 434 (480)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8865998873999999999999998877------7628999999999999857615999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 342457874433210000001355333202456566632100000124
Q gi|254780865|r 463 MFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVF 510 (666)
Q Consensus 463 ~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~ 510 (666)
T Consensus 435 ~~~~f~g~~~~---~~~~~~~~~~~m~~~~~~L~~l~i~~Gv~p~P~l 479 (480)
T PRK06525 435 FGRVVFGEPSE---AVADAAPLPLSMKLVLIVLIVMSLISSVIAAPWL 479 (480)
T ss_pred HHHHHCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99994899973---3477899988799999999999999998153103