HHsearch alignment for GI: 254780865 and conserved domain: PRK08377

>PRK08377 NADH dehydrogenase subunit N; Validated.
Probab=100.00  E-value=0  Score=688.85  Aligned_cols=459  Identities=23%  Similarity=0.383  Sum_probs=392.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf             92079899999999999999730124214789999999999999999999997258985289997531013088223577
Q gi|254780865|r    1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG   80 (666)
Q Consensus         1 M~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~   80 (666)
T Consensus         1 M~~l~sLlI~lPli~A~l~~ll~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~--~~~~~~~W~~----~~gi~   73 (493)
T PRK08377          1 MSQVASLLIALPLISAFFVPVLKGI-GKSLIMPYLVLITLLQTGIAGWVFYEVYTTGKP--IIIMAGGWKP----PVGIN   73 (493)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCC----CCCEE
T ss_conf             9748899999999999999998633-068999999999999999999999998158981--7998317578----63707


Q ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             87433789999999999999999974753068886618999999999999999865589999888888568899887620
Q gi|254780865|r   81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS  160 (666)
Q Consensus        81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~  160 (666)
T Consensus        74 ~~~d~ls~~~~ll~~~v~~~~~~ys~~~~~~~~-~~~~~~l~ll~~~g~~g~~~s~Dl~~lfvf~E~~~i~sy~Li~~~-  151 (493)
T PRK08377         74 LYIGHFAALFVLIIAVVSFFTALFSFRAVKVEP-IDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYN-  151 (493)
T ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf             788855489999999999999999998843686-240999999999999999998169999999999999999999987-


Q ss_pred             CCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             34454103630002212247899999999999962059899998754310001245555666666665320245531799
Q gi|254780865|r  161 FKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA  240 (666)
Q Consensus       161 ~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (666)
T Consensus       152 ~~~~~~~Aa~ky~i~~~~gs~~~L~gi~lly~~~Gt~~~~~l~~~~~~~-------------------------~~~~~~  206 (493)
T PRK08377        152 KTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHLAQLAAAI-------------------------DPTVAQ  206 (493)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC-------------------------CHHHHH
T ss_conf             9889999999999999999999999999999980897599999986245-------------------------738999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHH
Q ss_conf             999999999865433432343124000-023322100013456666777999963013578---1344445677777887
Q gi|254780865|r  241 IICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELS---PFVLDCITVLGCITAF  316 (666)
Q Consensus       241 ~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~---~~~~~~~~~~g~~t~~  316 (666)
T Consensus       207 ~~~~l~~~gf~~K~~~fPfH~WlPday~~apt~vsall-s~~~~k~g~y~l~R~~~~~~~~~~~~~~~~~l~~l~~~t~~  285 (493)
T PRK08377        207 VGLALIIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKVNGWSSVLKLLIIMATLTVV  285 (493)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999885706107774454446898607888-89999999999999999732301269999999999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC---CCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             63001110245202443210001353344565531---110034655531000122221012321110000110127761
Q gi|254780865|r  317 FAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRA---YGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLY  393 (666)
Q Consensus       317 ~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~---~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~  393 (666)
T Consensus       286 ~G~~~Al~Q~dlKrllAYSsIsq~G~i~lgi~~~~~~g~~~a~~~l~~h~~~k~~lFl~~g~i~~-~~g~~~l~~l~GL~  364 (493)
T PRK08377        286 FAELSALRQKDVKRMIAYSSIGQVGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLAVGYVGI-TLGGTEIENFQGLG  364 (493)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHCCHH
T ss_conf             99999998505509999989999999999999577989999999999999999999999999999-83887599965978


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             54669999999886421011000000002443217888888986410244444210221134543331034245787443
Q gi|254780865|r  394 PHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRV  473 (666)
Q Consensus       394 ~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~  473 (666)
T Consensus       365 ~~~P~~a~~~~i~~lsl~GiP------p~~GF~~K~~i~~aa~~~~~~-~~~~~~~i~svis~~Y~lr~i~~~ff~~~~~  437 (493)
T PRK08377        365 KRMPLTALALTIGAVATVGVP------LFNVFWSKFRIILATLQAGYT-WPAALVLFASVVEAVYYFRLIHTMWFEGEGE  437 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             662899999999999999887------764699999999999983969-9999999999999999999999994288875


Q ss_pred             CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             3210000001355333202456566632100000124
Q gi|254780865|r  474 DKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVF  510 (666)
Q Consensus       474 ~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~  510 (666)
T Consensus       438 ~~------~~--~~~~~~~~~l~~~~i~lGi~P~p~~  466 (493)
T PRK08377        438 RI------KE--GWIGVFLLLLAALIVVIGVYPTPVW  466 (493)
T ss_pred             CC------CC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             55------40--0289999999999999996379899