HHsearch alignment for GI: 254780865 and conserved domain: PRK08377
>PRK08377 NADH dehydrogenase subunit N; Validated.
Probab=100.00 E-value=0 Score=688.85 Aligned_cols=459 Identities=23% Similarity=0.383 Sum_probs=392.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 92079899999999999999730124214789999999999999999999997258985289997531013088223577
Q gi|254780865|r 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG 80 (666)
Q Consensus 1 M~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~ 80 (666)
T Consensus 1 M~~l~sLlI~lPli~A~l~~ll~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~--~~~~~~~W~~----~~gi~ 73 (493)
T PRK08377 1 MSQVASLLIALPLISAFFVPVLKGI-GKSLIMPYLVLITLLQTGIAGWVFYEVYTTGKP--IIIMAGGWKP----PVGIN 73 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEECCCCC----CCCEE
T ss_conf 9748899999999999999998633-068999999999999999999999998158981--7998317578----63707
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87433789999999999999999974753068886618999999999999999865589999888888568899887620
Q gi|254780865|r 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS 160 (666)
Q Consensus 81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~ 160 (666)
T Consensus 74 ~~~d~ls~~~~ll~~~v~~~~~~ys~~~~~~~~-~~~~~~l~ll~~~g~~g~~~s~Dl~~lfvf~E~~~i~sy~Li~~~- 151 (493)
T PRK08377 74 LYIGHFAALFVLIIAVVSFFTALFSFRAVKVEP-IDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYN- 151 (493)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 788855489999999999999999998843686-240999999999999999998169999999999999999999987-
Q ss_pred CCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 34454103630002212247899999999999962059899998754310001245555666666665320245531799
Q gi|254780865|r 161 FKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240 (666)
Q Consensus 161 ~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (666)
T Consensus 152 ~~~~~~~Aa~ky~i~~~~gs~~~L~gi~lly~~~Gt~~~~~l~~~~~~~-------------------------~~~~~~ 206 (493)
T PRK08377 152 KTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHLAQLAAAI-------------------------DPTVAQ 206 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC-------------------------CHHHHH
T ss_conf 9889999999999999999999999999999980897599999986245-------------------------738999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHH
Q ss_conf 999999999865433432343124000-023322100013456666777999963013578---1344445677777887
Q gi|254780865|r 241 IICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELS---PFVLDCITVLGCITAF 316 (666)
Q Consensus 241 ~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~---~~~~~~~~~~g~~t~~ 316 (666)
T Consensus 207 ~~~~l~~~gf~~K~~~fPfH~WlPday~~apt~vsall-s~~~~k~g~y~l~R~~~~~~~~~~~~~~~~~l~~l~~~t~~ 285 (493)
T PRK08377 207 VGLALIIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF-SAFVVKAGLYAMARILYLLQKVNGWSSVLKLLIIMATLTVV 285 (493)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999885706107774454446898607888-89999999999999999732301269999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC---CCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63001110245202443210001353344565531---110034655531000122221012321110000110127761
Q gi|254780865|r 317 FAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRA---YGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLY 393 (666)
Q Consensus 317 ~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~---~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~ 393 (666)
T Consensus 286 ~G~~~Al~Q~dlKrllAYSsIsq~G~i~lgi~~~~~~g~~~a~~~l~~h~~~k~~lFl~~g~i~~-~~g~~~l~~l~GL~ 364 (493)
T PRK08377 286 FAELSALRQKDVKRMIAYSSIGQVGLIALAFSLGTQAGVDAGVFHMLNHAIVKAMMFLAVGYVGI-TLGGTEIENFQGLG 364 (493)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHCCHH
T ss_conf 99999998505509999989999999999999577989999999999999999999999999999-83887599965978
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 54669999999886421011000000002443217888888986410244444210221134543331034245787443
Q gi|254780865|r 394 PHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRV 473 (666)
Q Consensus 394 ~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~ 473 (666)
T Consensus 365 ~~~P~~a~~~~i~~lsl~GiP------p~~GF~~K~~i~~aa~~~~~~-~~~~~~~i~svis~~Y~lr~i~~~ff~~~~~ 437 (493)
T PRK08377 365 KRMPLTALALTIGAVATVGVP------LFNVFWSKFRIILATLQAGYT-WPAALVLFASVVEAVYYFRLIHTMWFEGEGE 437 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 662899999999999999887------764699999999999983969-9999999999999999999999994288875
Q ss_pred CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 3210000001355333202456566632100000124
Q gi|254780865|r 474 DKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVF 510 (666)
Q Consensus 474 ~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~ 510 (666)
T Consensus 438 ~~------~~--~~~~~~~~~l~~~~i~lGi~P~p~~ 466 (493)
T PRK08377 438 RI------KE--GWIGVFLLLLAALIVVIGVYPTPVW 466 (493)
T ss_pred CC------CC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55------40--0289999999999999996379899