HHsearch alignment for GI: 254780865 and conserved domain: PRK08667
>PRK08667 hydrogenase membrane subunit; Validated.
Probab=100.00 E-value=0 Score=839.19 Aligned_cols=591 Identities=24% Similarity=0.372 Sum_probs=445.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 92079899999999999999730124214789999999999999999-99999725898528999753101308822357
Q gi|254780865|r 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSW-YVFYEIGFGHDVQVVKREIFPWIIFDGLDIPW 79 (666)
Q Consensus 1 M~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~ 79 (666)
T Consensus 2 m~~l~l~~i~lpl~ga~l~ll~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~----~~~~~~~--~~~~ 71 (644)
T PRK08667 2 LAGLFLGAILLLLAAAVIPLVFRHKNIRV---WQSSLLLLIASALLLLFALLVLF-TGNPLDI----PLWGIAP--GLDI 71 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHH-CCCCEEE----EEEEECC--CCEE
T ss_conf 57899999999999999999825875106---99999999999999999999995-4898389----8642069--9628
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78743378999999999999999997475306888661---899999999999999986558999988888856889988
Q gi|254780865|r 80 GLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPR---FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLI 156 (666)
Q Consensus 80 ~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~---f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li 156 (666)
T Consensus 72 ~f~vD~LS~~fl~lv~~v~~~v~lYs~~Y~~~~~~~~r~~~~~~~~~Lf~~sm~~vv~a~dl~~~~vfwE~m~l~sy~LI 151 (644)
T PRK08667 72 TFHIDRLAAFFIILIGLVSLCVAIYSLGYNEHMKSNERANLLSALTALFILSMLLVVASANTISFLVFWEIMALSSFFLV 151 (644)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98855668999999999999999996288662768631419999999999999999998379999999999999999998
Q ss_pred HHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 76203445410363000221224789999999999996205989999875431000124555566666666532024553
Q gi|254780865|r 157 GFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236 (666)
Q Consensus 157 ~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (666)
T Consensus 152 ~~~~~~~~~~~Aa~ky~i~~~~G~~~ll~g~~~l~~~~Gs~~~~~~~~~------------------------------~ 201 (644)
T PRK08667 152 MNDYQEEETQRAGFFYFVMTQLSTVFLMLGIILLFIQTGSFELSPLGAP------------------------------S 201 (644)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH------------------------------H
T ss_conf 4009989999999999999999999999999999999761889998864------------------------------2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHH
Q ss_conf 1799999999999865433432343124000-023322100013456666777999963-01357813444456777778
Q gi|254780865|r 237 DSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFELSPFVLDCITVLGCIT 314 (666)
Q Consensus 237 ~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~~~~~~~~~~~~~g~~t 314 (666)
T Consensus 202 ~~~~l~~~llliGf~~Kag~~P~H~WLP~A~~~APtpVSALl-sgvmvk~gvy~liR~~~~~~~~~~~~~~~ll~lG~iT 280 (644)
T PRK08667 202 GSLPLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSPVSALM-SGVMLKVAVYGLIRFLMDVLAPELWWGVLILLAGSIS 280 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 148999999999999988050269760666678980899999-9999999999999999985140589999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC--------------CCCCHHHHHHHHHCCHHHHHHHCCCCCCCC
Q ss_conf 876300111024520244321000135334456553--------------111003465553100012222101232111
Q gi|254780865|r 315 AFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR--------------AYGASIFHLFTHAFFKALLFLGSGSVIHAV 380 (666)
Q Consensus 315 ~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~--------------~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~ 380 (666)
T Consensus 281 ~l~G~l~Al~Q~DiKrlLAYSSisqiG~i~lglG~~~~~~~~g~~~l~~la~~~al~hl~nHa~fKalLFl~aG~v~~~- 359 (644)
T PRK08667 281 ALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHA- 359 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999997621899999999999999999998743101135115678899999999999999999999998799997-
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------CCCCCHHH
Q ss_conf 000011012776154669999999886421011000000002443217888888986410244---------44421022
Q gi|254780865|r 381 AGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTF---------VFFLLLFA 451 (666)
Q Consensus 381 ~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~---------~~~~~~~~ 451 (666)
T Consensus 360 tgt~~i~~lgGL~k~mP~t~~~f~ig~lai~GlP------P~~GF~Sk~li~~~~~~~~~~~~~~~~~~~~~~~~~lal~ 433 (644)
T PRK08667 360 TGTRNIEKMGGLVKRMPYTSALFLVGAVSIAALP------PFNGFASELLLYESFFQSFSVADPLIKILLFVVLALFALT 433 (644)
T ss_pred CCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCC------HHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1870299968944321899999999999987372------0047999999999998545654237999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11345433310342457874433210000001355333202456566632100000124676421134554335753332
Q gi|254780865|r 452 AFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNV 531 (666)
Q Consensus 452 ~~lt~~Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 531 (666)
T Consensus 434 ~~la~~~~~k~~g~~Flg~pr~~~--~~~a~e~~~~m~~~~~~la~~~~~~g~~~~~~~~~~~~~~-------~~----- 499 (644)
T PRK08667 434 SALAAACFVKAFGITFLAMPRSQE--ARSAREVSKPMLIGPAVLAVACLVLGLFSVQIFSLAGYSF-------DL----- 499 (644)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CC-----
T ss_conf 999999999999986138889854--3466779812789999999999999964688998627665-------67-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHH-HHHHCCCC----HHHHHHHHHHHHHHH----
Q ss_conf 012336889999999999999999999998704012466564112589-99870578----168999999999999----
Q gi|254780865|r 532 LERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFY-CFLQNAWY----FDRIYDCLLVRPIVR---- 602 (666)
Q Consensus 532 l~~~~~~~l~~~~i~ll~~iiGi~la~lly~~~~~~~~~~~~~~~~l~-~~l~~~~y----~d~lY~~~ivk~~~~---- 602 (666)
T Consensus 500 -p---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~W~cG~~~~~~~mqyta~~f~~pl~~~f~~~~r~~~~~ 570 (644)
T PRK08667 500 -P---DL----LLVGLLLLIFGVLVFGMVRSFASRKS-RISETWACGYPRPTPRMEYTGSGFSEPLVQIFRPIYRTRIYN 570 (644)
T ss_pred -C---HH----HHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHEECHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -4---58----99999999999999999998444655-677773167888663002155446457999989987423014
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------999999987557665341549999999999998850962889999999999999999998
Q gi|254780865|r 603 ------------LATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVMLL 662 (666)
Q Consensus 603 ------------ls~~l~~~~D~~i~d~~v~gi~~~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~~ll 662 (666)
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~v~~~~~~~~~lQ~G~i~~Y~lyi~~~lv~lli~~~~ 642 (644)
T PRK08667 571 TREYLDNQQCIFKQGKSEIHLVKFFEEYLYLPPARAIDRISRYVSRLQNGDLDSYVLYVFLAVLVLIIALGW 642 (644)
T ss_pred CCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 643234321001354212210877887856899999999999988652787899999999999999999998