HHsearch alignment for GI: 254780865 and conserved domain: PRK08668
>PRK08668 NADH dehydrogenase subunit M; Validated.
Probab=100.00 E-value=0 Score=845.09 Aligned_cols=595 Identities=24% Similarity=0.410 Sum_probs=460.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 07989999999999999973012421478999999999999999999999725898528999753101308822357787
Q gi|254780865|r 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLR 82 (666)
Q Consensus 3 ~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~ 82 (666)
T Consensus 1 n~L~LiIllPLigA~l~~ll~k~-~~~----i~~~~s~~~~~~~l~l~~~~~~~~~~~~-----~~~~~~~~~--~i~f~ 68 (616)
T PRK08668 1 NELPLLILVPLIGSVLAWLLTKI-NKK----IGVIGNFLPLLFLIKLYPTLEVGTGEKL-----TLFSNFGGF--ELQLK 68 (616)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCH-HHH----HHHHHHHHHHHHHHHHHHHHHCCCCCEE-----EEEEECCCC--EEEEE
T ss_conf 94099999999999999998553-479----9999999999999999999855877146-----764105871--27886
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 43378999999999999999997475306888661899999999999999986558999988888856889988762034
Q gi|254780865|r 83 IDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFK 162 (666)
Q Consensus 83 ~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~ 162 (666)
T Consensus 69 lD~ls~~f~lli~~v~~lv~lys~~Ym~~~~~~~~f~~~lll~~~~mlgvv~s~dl~~lfvfwEl~~l~sylLI~~~--~ 146 (616)
T PRK08668 69 LTHLGWYFAIISLLVGLSVSFFMVEWLEKQKNPAAFNMFALMSLTGVLGVFFANDLITLFIFWEIAVLGSFMIVPMG--K 146 (616)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_conf 45667999999999999999999998427998109999999999999999999389999999999999999977729--8
Q ss_pred HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 45410363000221224789999999999996205989999875431000124555566666666532024553179999
Q gi|254780865|r 163 ESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242 (666)
Q Consensus 163 ~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
T Consensus 147 ~~a~~Aa~kyfi~~~vG~~~~L~gi~lly~~~Gt~~~~~i~~~l~~~~------------------------~~~~~~~~ 202 (616)
T PRK08668 147 KESRKASLKYFVLSAIGAYAMLFAIFLIYAKYGTFSFDEISQALLNDA------------------------SLGFKLIV 202 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC------------------------CHHHHHHH
T ss_conf 389999999999999999999999999999978634999999985175------------------------41799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC------------HHHHHHHHH
Q ss_conf 9999999865433432343124000-023322100013456666777999963013578------------134444567
Q gi|254780865|r 243 CLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELS------------PFVLDCITV 309 (666)
Q Consensus 243 ~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~------------~~~~~~~~~ 309 (666)
T Consensus 203 ~l~l~~~~~~Ksa~fPfH~WLPdA~~~aP~~vSall-sg~mvk~Gvy~lir~~~l~~~~~~~~~~~~~~~~~~~~~ii~~ 281 (616)
T PRK08668 203 VLFLSAAGIAKSGIFPLHTWLPDAYGEAPQSFTAVF-SGQLSKMGVYGFLLVYAVIPTGKLFSEFGTYHGVPLFNYIIIW 281 (616)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999984628776876252067978999999-9999999999999999997212766654220032579999999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 77778876300111024520244321000135334456553---111003465553100012222101232111000011
Q gi|254780865|r 310 LGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDM 386 (666)
Q Consensus 310 ~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i 386 (666)
T Consensus 282 lg~iT~i~gal~Al~Q~DiKrlLAYSSisq~Gyillgig~g~~~g~~galfhli~Ha~~Ka~LFL~aG~v~~~-~gt~di 360 (616)
T PRK08668 282 LGNISIIVGTLMAILQEDMKKLIAYSSIANGGYILIGLGTGDSLGFAGGLFHVFNHALAKGLFFLSFAAVIYR-TGTTKI 360 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEH
T ss_conf 9999999999999986018999999999999999999986659999999999999999999999999999997-386639
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 01277615466999999988642101100000000244321788888898641024444421022113454333103424
Q gi|254780865|r 387 RRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLT 466 (666)
Q Consensus 387 ~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~v 466 (666)
T Consensus 361 ~~lgGL~k~mP~t~~~~~i~~lsl~GiP------p~~GF~SK~~i~~a~~~~~~~-~~~~~~~~~~~~t~~y~~r~~~~~ 433 (616)
T PRK08668 361 KEMGGLIEKMPVTFAMYLVAIISLAGIP------PMSGFASKWLIFEALISKGMF-ITAFMVFFGSIGSFLYVFRPLAGV 433 (616)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9858912005899999999999987360------304899999999999985876-999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 57874433210000001355333202456566632100000124676421134554335753332012336889999999
Q gi|254780865|r 467 FFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSS 546 (666)
Q Consensus 467 F~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~i~ 546 (666)
T Consensus 434 F~G~~~~---~~~~~~E~p~~M~ipm~iLa~~~v~~G~~P~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 508 (616)
T PRK08668 434 FLGQLPS---KHEDVKEAPLPMLIPMLILVLLTVVFGVAPGPVLQEI--NKIFGELVIGPIEPEGWKLKTGFGSWNTLLV 508 (616)
T ss_pred HCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHEECCHHHHHHH--HHHHHCCCCCCCCCCCEEEECCCCCCCHHHH
T ss_conf 5799974---3488999967688999999999998210771668999--9987403647776554122247664218999
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999987040124665641125899987057816899--99999999999999999875576653415499
Q gi|254780865|r 547 FIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIY--DCLLVRPIVRLATILWKRVDLSIDKYGPGGIV 624 (666)
Q Consensus 547 ll~~iiGi~la~lly~~~~~~~~~~~~~~~~l~~~l~~~~y~d~lY--~~~ivk~~~~ls~~l~~~~D~~i~d~~v~gi~ 624 (666)
T Consensus 509 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~-~~~~~~~~ 578 (616)
T PRK08668 509 FIWFVVGFIIAAILYFLGPKAKKVP---LTDTYT-SGEFVYNEDLYHYATNFYLPLER---AYW--LHPSF-EKLYKMIA 578 (616)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCC-CCCCCCCHHHHHHHHHHHHHHHH---HHH--HCCCH-HHHHHHHH
T ss_conf 9999999999999997266666676---434202-48755630466888886367999---998--53309-99999999
Q ss_pred HHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998-850962889999999999999999
Q gi|254780865|r 625 ACVRYLSSYSS-RLQTGYLDHYAFSMLIGISILVIV 659 (666)
Q Consensus 625 ~~v~~~s~~lr-~lQtG~i~~Yi~~i~igl~llli~ 659 (666)
T Consensus 579 ~~~~~~~~~~~~~~~~g~~~~Y~~~~~i~l~~~~~~ 614 (616)
T PRK08668 579 KLFEDFGETIRSYFYNGNVSAYVFWLAIILLILFWV 614 (616)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999960797679999999999999996