HHsearch alignment for GI: 254780865 and conserved domain: PRK08676
>PRK08676 hydrogenase membrane subunit; Validated.
Probab=100.00 E-value=0 Score=661.24 Aligned_cols=394 Identities=23% Similarity=0.375 Sum_probs=344.6
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8743378999999999999999997475306--------88866189999999999999998655899998888885688
Q gi|254780865|r 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHD--------DPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLAS 152 (666)
Q Consensus 81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~--------~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~s 152 (666)
T Consensus 58 ~~iD~Ls~~~l~l~~~v~~l~~lyS~~Ym~~~~~~~~~~~~~~~~fy~l~~l~~~~m~~~~~s~nl~~fyvf~E~~~i~s 137 (486)
T PRK08676 58 LFIDHLGLFVVLIASLIFILAALYARGYVDHLLESGELDPENLKVFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVFS 137 (486)
T ss_pred HEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21666169999999999999999988885114102456875466999999999999999999958999999999999999
Q ss_pred HHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998876203445410363000221224789999999999996------20598999987543100012455556666666
Q gi|254780865|r 153 YLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF------HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSF 226 (666)
Q Consensus 153 y~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~------gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (666)
T Consensus 138 ~~LI~~~~-~~~~~~Aa~ky~~~~~~~~~~~l~g~~~l~~~~~~~~~~gtl~~~~l~~~~~~------------------ 198 (486)
T PRK08676 138 AMLIAILS-ARENIDAALKYIFIASTAMIFAFIGLIFLFELTRQALGTGTLNWTELAAHASL------------------ 198 (486)
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC------------------
T ss_conf 99997579-89999999999999999999999999999999998725786039999976313------------------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---CHH
Q ss_conf 65320245531799999999999865433432343124000-02332210001345666677799996301357---813
Q gi|254780865|r 227 SFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFEL---SPF 302 (666)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~---~~~ 302 (666)
T Consensus 199 -------~~~~~~~~~~~l~ligf~~K~~~~PfH~WLPdA~~eAPtpvSalL-savl~k~G~y~i~R~~~~~~~~~~~~~ 270 (486)
T PRK08676 199 -------LSPGMLGASFLFIFIGFAAKSGIVPFHTWLPAAYAKAPSAVSAVL-SGTVLNIGIYGILRMSALLRQSGAAEQ 270 (486)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf -------785899999999999999987151215650676678994799999-999999999999999998623024899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC---CCCHHHHHHHHHCCHHHHHHHCCCCCCC
Q ss_conf 4444567777788763001110245202443210001353344565531---1100346555310001222210123211
Q gi|254780865|r 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRA---YGASIFHLFTHAFFKALLFLGSGSVIHA 379 (666)
Q Consensus 303 ~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~---~~~a~~~~~~H~~~ka~LFl~aG~vi~~ 379 (666)
T Consensus 271 ~~~~l~~lg~~tii~g~~~Al~Q~DlKrlLAYSSIshmG~i~lg~~~gt~~~~~gal~~~i~H~l~k~~LFl~aG~i-~~ 349 (486)
T PRK08676 271 VSNVLIVFGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWALFHMLAHSLVKAGLFFSAGIL-HR 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 99999999999999999999987116799999799999999999996739999999999999999999999999999-99
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 10000110127761546699999998864210110000000024432178888889864102444442102211345433
Q gi|254780865|r 380 VAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYS 459 (666)
Q Consensus 380 ~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~ 459 (666)
T Consensus 350 ~~gt~~i~~l~GL~~~mP~~a~~~~i~~lsl~GlP------P~~gF~sK~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~ 421 (486)
T PRK08676 350 QYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMP------PFPLFLSKFFILLQLGAISV--WLVLAVLLLLLLAASSF 421 (486)
T ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 74997699865988663899999999999998776------75459999999999998767--99999999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 310342457874433210000001355333202456566632100000124
Q gi|254780865|r 460 WRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVF 510 (666)
Q Consensus 460 ~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~ 510 (666)
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~m~~p~~iLa~l~l~lGv~~p~~l 472 (486)
T PRK08676 422 ANFLLKAFTRSTPEEENRDPVPYRTPLSMKVPIVILLALVLALGVYFPPGL 472 (486)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999995577887778888776863189999999999999996644679