>TIGR01960 ndhF3_CO2 NAD(P)H dehydrogenase, subunit NdhF3 family; InterPro: IPR010217 This family represents NAD(P)H dehydrogenase subunit 5, or ndhF. It is restricted to two paralogs in each completed cyanobacterial genome, in which several subtypes of ndhF are found. Included in this family is NdhF3, shown to play a role in high-affinity CO2 uptake in Synechococcus sp. PCC7002. In all cases, neighbouring genes include a paralog of ndhD but do include other NAD(P)H dehydrogenase subunits. Instead, genes related to C02 uptake tend to be found nearby.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.

Probab=100.00 E-value=0 Score=794.23 Aligned_cols=599 Identities=26% Similarity=0.442 Sum_probs=543.5 Q ss_pred HHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEE Q ss_conf 899999999999999730----1242147899999999999999999999972589852899975310130882235778 Q gi|254780865|r 6 EVIVFLPLIGAVFSGFFG----RLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGL 81 (666) Q Consensus 6 ~l~~~~Pl~~a~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~ 81 (666) T Consensus 10 W~vP~Y~L~G~~L~lPWs~G~~R~TGPRPAaY~N~lmT~vaf~Hsl~~l~~iw~~p~~~l----~~~WL~~AdL~L~~~l 85 (613) T TIGR01960 10 WLVPFYALIGALLALPWSPGIVRKTGPRPAAYFNLLMTFVAFVHSLLALQAIWSQPPEEL----VFTWLQAADLDLSFAL 85 (613) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE----EECCCCCCCCCCCCEE T ss_conf 898889999999984444384026889847899999999999999999999727995448----6332057999854201 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 74337899999999999999999747530688866189999999999999998655899998888885688998876203 Q gi|254780865|r 82 RIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSF 161 (666) Q Consensus 82 ~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~ 161 (666) T Consensus 86 eIS~v~~gAl~liTGLnllAQIfAlGYmEkDWglARFf~LLglFEAaL~glvl~dSLFlSYvlLEiLTLsTYLLvGfWfa 165 (613) T TIGR01960 86 EISSVSTGALVLITGLNLLAQIFALGYMEKDWGLARFFALLGLFEAALSGLVLSDSLFLSYVLLEILTLSTYLLVGFWFA 165 (613) T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 21116799999999999999998754343332479999999999999999999987888899999999889999888870 Q ss_pred CHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH Q ss_conf 44541036300022122478999999999999620598999987543100012455556666666653202455317999 Q gi|254780865|r 162 KESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAI 241 (666) Q Consensus 162 ~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (666) T Consensus 166 QPLVVtaARDAFLTKRVGDl~LLMGVvaL~pLAGs~ny~~L~~WA~tA~-----------------------l~~~~~TL 222 (613) T TIGR01960 166 QPLVVTAARDAFLTKRVGDLLLLMGVVALSPLAGSWNYDDLAEWAATAN-----------------------LDPTTATL 222 (613) T ss_pred CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC-----------------------CCCHHHHH T ss_conf 2303314421102347889999989999842146788277999982058-----------------------98268888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999865433432343124000023322100013456666777999963013578134444567777788763001 Q gi|254780865|r 242 ICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATV 321 (666) Q Consensus 242 ~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~ 321 (666) T Consensus 223 lgLaLIAGP~GKCAQFPLHLWLDEAMEGP~PAsI-lRNsvVVA~GAyvLiKLQPvL~LSPvA~~~li~IG~VTAig~SLi 301 (613) T TIGR01960 223 LGLALIAGPTGKCAQFPLHLWLDEAMEGPNPASI-LRNSVVVAAGAYVLIKLQPVLTLSPVALTVLIAIGSVTAIGASLI 301 (613) T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8899974013222468754100021478884267-877898886442210021054211589999989855788878899 Q ss_pred HHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 11024520244321000135334456553111003465553100012222101232111000011012776154669999 Q gi|254780865|r 322 GLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCW 401 (666) Q Consensus 322 al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~ 401 (666) T Consensus 302 aIAQiDIKR~LSysvSaYmGLVFIAVG~~q~~~Al~lllTha~A~AlL~MS~GsiI~n-~~tQDlT~lGGLWsRrPisg~ 380 (613) T TIGR01960 302 AIAQIDIKRALSYSVSAYMGLVFIAVGLGQGELALLLLLTHAIAKALLFMSIGSIIFN-TVTQDLTELGGLWSRRPISGL 380 (613) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCCHHHCCCCCCCCCHHHH T ss_conf 9999879889989999876365621137886435788899999999985105756551-776221313887466613344 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH Q ss_conf 99988642101100000000244321788888898641024444421022113454333103424578744332100000 Q gi|254780865|r 402 MMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKI 481 (666) Q Consensus 402 ~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~~~~ 481 (666) T Consensus 381 sFvVGsagLia~~------PLG~FWa~~~l~d~~~~~~--PwlvGvll~VN~ltA~nLtR~F~LvF~G~ak---pkT~Rs 449 (613) T TIGR01960 381 SFVVGSAGLIALP------PLGSFWAWLKLADGLWATS--PWLVGVLLLVNLLTAFNLTRVFRLVFGGKAK---PKTRRS 449 (613) T ss_pred HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHEEEEECCCCC---CCCCCC T ss_conf 6999967998745------3125899999862455441--5999999999999876542002445417888---874568 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01355333202456566632100000124676421134554335753332012336889999999999999999999998 Q gi|254780865|r 482 HESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMY 561 (666) Q Consensus 482 ~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~i~ll~~iiGi~la~lly 561 (666) T Consensus 450 PEV~Wpm~lPMv~l~il~LllPl~l~~~~llP~~t-------------yPlG~~~~~~~~~~~~L~~s~l~G~~~gs~i~ 516 (613) T TIGR01960 450 PEVLWPMALPMVVLIILVLLLPLILQQWSLLPAAT-------------YPLGDWASIDWAVVALLVVSTLLGVLIGSFIY 516 (613) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 78776314533999999999999999876635421-------------36665555159999999999999888764302 Q ss_pred HHCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 70401246656411258999870578168999999999999999999987557665341549999999999998850962 Q gi|254780865|r 562 IICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGY 641 (666) Q Consensus 562 ~~~~~~~~~~~~~~~~l~~~l~~~~y~d~lY~~~ivk~~~~ls~~l~~~~D~~i~d~~v~gi~~~v~~~s~~lr~lQtG~ 641 (666) T Consensus 517 L~~-~~~kp~~lPl~~vQdLlAYDfY~d~lYr~TvV~aV~~lSr~~-~W~DR~~VDGivN~~G~~tl~gG~~LKYs~sGQ 594 (613) T TIGR01960 517 LKK-AISKPIRLPLRFVQDLLAYDFYTDKLYRLTVVAAVASLSRIS-AWFDRYVVDGIVNLVGLVTLFGGEGLKYSVSGQ 594 (613) T ss_pred CCC-CCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHCCEEECCHHHHHHHHHHHCCCCCCCCCCCH T ss_conf 267-789861257156765545421514560126899999999987-532445443037767888773366332213635 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999999 Q gi|254780865|r 642 LDHYAFSMLIGISILVIV 659 (666) Q Consensus 642 i~~Yi~~i~igl~llli~ 659 (666) T Consensus 595 sQ~Y~Ltil~Gva~Lg~f 612 (613) T TIGR01960 595 SQFYLLTILLGVAILGAF 612 (613) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 489999999999999982

HHsearch alignment for GI: 254780865 and conserved domain: TIGR01960