HHsearch alignment for GI: 254780865 and conserved domain: pfam00361
>pfam00361 Oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=100.00 E-value=0 Score=482.95 Aligned_cols=265 Identities=37% Similarity=0.670 Sum_probs=240.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 65589999888888568899887620344541036300022122478999999999999620598999987543100012
Q gi|254780865|r 135 SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGN 214 (666)
Q Consensus 135 s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~ 214 (666)
T Consensus 1 s~dl~~~~v~~El~~l~~y~Li~~~~~~~~~~~Aa~ky~i~~~~~s~~lL~gi~~ly~~~gt~~~~~~~~~~-------- 72 (270)
T pfam00361 1 SNNLLLFYLGWELLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLTGSLSFTLLFLFG-------- 72 (270)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC--------
T ss_conf 974999999999999999999883499999999999999999999999999999999986222699998643--------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC-CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4555566666666532024553179999999999986543343234312400002-332210001345666677799996
Q gi|254780865|r 215 SVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARM 293 (666)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~a-PtpvSAllhs~~mv~~Gvy~l~r~ 293 (666)
T Consensus 73 -------------------~~~~~~~~~~~l~~~g~~~K~~~~PfH~Wlpday~~ap~~~s~~-ls~v~~~~g~~~l~r~ 132 (270)
T pfam00361 73 -------------------LNSNGLLLLSLLLLVAFLVKSPQFPFHFWLPDAHEGPPPVSSLI-LATTLKKAGLYLLLRL 132 (270)
T ss_pred -------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf -------------------56348999999999999999948624755778857998789999-9989999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHH
Q ss_conf 301357813444456777778876300111024520244321000135334456553---11100346555310001222
Q gi|254780865|r 294 SPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLF 370 (666)
Q Consensus 294 ~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LF 370 (666)
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~s~i~g~~~Al~Q~dlKrllAYSSis~~G~il~~~~~~~~~~~~~~~~~~i~h~~~k~~lF 212 (270)
T pfam00361 133 SNLFSSSNLISYILLILGILSMLLGSLGALNQTDLKKLIAYSSISHMGFVMMGILSLGSYGIIGAIIHLISHGFFSALLF 212 (270)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98613237899999999999999999999833027799999999999999999998657799999999999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2101232111000011012776154669999999886421011000000002443217888888
Q gi|254780865|r 371 LGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEV 434 (666)
Q Consensus 371 l~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~ 434 (666)
T Consensus 213 ~~~g~i~~-~~~~~~i~~l~Gl~~~~P~~~~~~~i~~lsl~GiP------p~~GF~~K~~i~~s 269 (270)
T pfam00361 213 LLAGLIIH-RSGTRDLRNYGGLFNSMPILALLLLLLLLSLMGLP------PLLGFISKFLILES 269 (270)
T ss_pred HHHHHHHH-HCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHC
T ss_conf 99999998-75887099870969882999999999999998775------76038899999864