HHsearch alignment for GI: 254780865 and conserved domain: pfam01010
>pfam01010 Oxidored_q1_C NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus. This sub-family represents a carboxyl terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 from chloroplasts are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=99.05 E-value=3.6e-10 Score=80.77 Aligned_cols=135 Identities=27% Similarity=0.273 Sum_probs=87.7
Q ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHHHH
Q ss_conf 21000000135533320245656663210000012467642113455433575------333201233688999999999
Q gi|254780865|r 475 KDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASS------SNNVLERYHEVPLWVEYSSFI 548 (666)
Q Consensus 475 ~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~~~~~~l~~~~------~~~~l~~~~~~~l~~~~i~ll 548 (666)
T Consensus 86 k~~~~YP~ESdNTMLFPLlvL~lfTlFIG~IGIPF~q~~~~lDILSkwLtPsinllh~~~~~s~dwy--EF~~nAifSVS 163 (242)
T pfam01010 86 KKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWY--EFLKNAIFSVS 163 (242)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHCCCCCCCHH--HHHHCCHHHHH
T ss_conf 7667785656763037789999999877521354156775521566753267203213036763499--99855225578
Q ss_pred HHHHHHHHHHHHHHHCCHH------HH----------HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998704012------46----------6564112589998705781689999999999999999999875
Q gi|254780865|r 549 AFFVGFFSAFLMYIICPSL------PK----------FLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVD 612 (666)
Q Consensus 549 ~~iiGi~la~lly~~~~~~------~~----------~~~~~~~~l~~~l~~~~y~d~lY~~~ivk~~~~ls~~l~~~~D 612 (666)
T Consensus 164 IA~fGIfIA~~lY~p~ySs~qn~~l~N~f~K~~~kr~~~dki~n~IYnWSynRGYID~fY~~~~~~giR~La~~~-~fFD 242 (242)
T pfam01010 164 IAYFGIFIASFLYKPVYSSFQNLDLINSFVKRGPKRIFLDKIINVIYNWSYNRGYIDVFYTTSFTRGIRGLAELT-HFFD 242 (242)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCC
T ss_conf 999999999983365411335602443413467432146675307746613551346656556898899898876-3169