HHsearch alignment for GI: 254780865 and conserved domain: pfam06455
>pfam06455 NADH5_C NADH dehydrogenase subunit 5 C-terminus. This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.
Probab=99.70 E-value=6.2e-16 Score=116.87 Aligned_cols=179 Identities=24% Similarity=0.408 Sum_probs=147.3
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 33310342457874433210000001355333202456566632100000124676421134554335753332012336
Q gi|254780865|r 458 YSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHE 537 (666)
Q Consensus 458 Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 537 (666)
T Consensus 1 YS~RL~~~~~~~~~~~~--~~~~~~e~~~~m~~pm~~L~~~sI~~G~~l~w~~~~~~~-------------------~~~ 59 (181)
T pfam06455 1 YSFRLIYYVMTGSPNFS--SLSPINENNPIMINPMKRLAWGSIFGGSLLSWLIFPKPP-------------------MIT 59 (181)
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------------CEE
T ss_conf 94899999996799988--454078786889999999999999999999999868976-------------------300
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_conf 8899999999999999999999987040124665641125899987057816899999999999999999998755-766
Q gi|254780865|r 538 VPLWVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDL-SID 616 (666)
Q Consensus 538 ~~l~~~~i~ll~~iiGi~la~lly~~~~~~~~~~~~~~~~l~~~l~~~~y~d~lY~~~ivk~~~~ls~~l~~~~D~-~i~ 616 (666)
T Consensus 60 lp~~~Kll~l~~~~~G~~l~~~l~~~~~~~~~~--~~~~~~~~F~~~MWFl~~ls~~~~~~~~l~~g~~~~k~~D~GW~E 137 (181)
T pfam06455 60 LPLYLKLLALLVTILGLLLGLELSNLSLKQLKK--SLNFNLSSFSSSMWFFPNLSHRLIPKLSLKLGQKLAKQLDQGWLE 137 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 239899999999999999999999988231211--212147898888774799999998899999999999988843999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 5341549999999999998850962889999999999999999
Q gi|254780865|r 617 KYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIV 659 (666)
Q Consensus 617 d~~v~gi~~~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~ 659 (666)
T Consensus 138 ~~G~qG~~~~~~~~s~~~~~~q~~~ik~yl~~~~~~~~~~~~~ 180 (181)
T pfam06455 138 KFGPQGIAKTLMTLSKLIQNLQKGLIKIYLLSFLLWLLLLLLL 180 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9816799999999999999999636999999999999999998