HHsearch alignment for GI: 254780865 and conserved domain: pfam10125
>pfam10125 NADHdeh_related NADH dehydrogenase I, subunit N related protein. This family comprises a set of NADH dehydrogenase I, subunit N related proteins found in archaea. Their exact function, has not, as yet, been determined.
Probab=97.50 E-value=0.00089 Score=40.65 Aligned_cols=134 Identities=15% Similarity=0.196 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999865589999888888568899887620344541036300022122478999999999999620598999987
Q gi|254780865|r 126 TFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQN 205 (666)
Q Consensus 126 ~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~ 205 (666)
T Consensus 79 GiAtagam~TgDlFnFtLFlaliGI~NIGIVsa-Vk~~~VLnaAf~YGliamiaslPLFGgAaliLa~tGTLSi~EL~~~ 157 (219)
T pfam10125 79 GLATAGAMVTGDLFNFTLFLALIGISNIGIVSA-VKNEWVLNAAFNYGLIAMIATLPLFGGAALILAKTGTLSIWELSKM 157 (219)
T ss_pred HHHHHCCEEECCHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEHHHHHCC
T ss_conf 886513000130677999999976112210210-4178999878755389998646433157877654674049988528
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC-CCCCCCHHHHHHHH
Q ss_conf 54310001245555666666665320245531799999999999865433432343124000023-32210001345666
Q gi|254780865|r 206 ASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGP-TPVSALIHAATMVT 284 (666)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aP-tpvSAllhs~~mv~ 284 (666)
T Consensus 158 ~-----------------------------~~~l~~~k~l~~~Gv~GE~GvAPFYaaKAEmfRapGaPyilmIHlSS--- 205 (219)
T pfam10125 158 A-----------------------------GDVLLYAKILLAAGVIGETGVAPFYAAKAEMFRAPGAPYILMIHLSS--- 205 (219)
T ss_pred C-----------------------------CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHH---
T ss_conf 8-----------------------------42389999999977505467551577678885389996786212878---
Q ss_pred HHHHHHHHHH
Q ss_conf 6777999963
Q gi|254780865|r 285 AGVFLVARMS 294 (666)
Q Consensus 285 ~Gvy~l~r~~ 294 (666)
T Consensus 206 --LL~ivR~v 213 (219)
T pfam10125 206 --LLLFVRVV 213 (219)
T ss_pred --HHHHHHHH
T ss_conf --99999998